PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_26056A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NAC
Protein Properties Length: 247aa    MW: 27424.9 Da    PI: 4.2111
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_26056AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM43.41.1e-13378677128
                        NAM  77 atksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                ++k+gyWk   +++ ++s  +  vg+k++L fy+g+ap g++t W+mhey++
  Oropetium_20150105_26056A  37 KAKNGYWKPVDSSRILTS--TPIVGVKTILEFYEGHAPCGKRTGWMMHEYQV 86 
                                5789*****999776666..889***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100521.5411107IPR003441NAC domain
SuperFamilySSF1019411.96E-1912107IPR003441NAC domain
PfamPF023654.0E-73786IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MESADAESMQ PRSGSVWYLK WSDGQGPYDS AESSIGKAKN GYWKPVDSSR ILTSTPIVGV  60
KTILEFYEGH APCGKRTGWM MHEYQVEQND EANLPQDYKS LCKVFLQSDK NAESGQSSLN  120
ANAPNDSFES YLQYLAKIEE PEHGQRTEID VDDIAAHDNI VTDDYIELKD LLNSEASSST  180
SENTSKRSMI SEEYFDSDAF LKEIMEDADG QHNNHNFSIA APSKSANVVI SPTEQGNFPS  240
VSFFLF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_26056A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797453.13e-98NAC domain-containing protein 76-like isoform X1
RefseqXP_025797454.14e-98NAC domain-containing protein 76-like isoform X2
RefseqXP_025797456.13e-98NAC domain containing protein 52-like isoform X4
RefseqXP_025797457.13e-98NAC domain containing protein 52-like isoform X4
TrEMBLA0A3L6SEL43e-98A0A3L6SEL4_PANMI; Protein BEARSKIN2-like
STRINGPavir.Ib03017.1.p3e-98(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109162632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34190.13e-14NAC domain containing protein 17