PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_26561A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family B3
Protein Properties Length: 231aa    MW: 25765.7 Da    PI: 7.5624
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_26561AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.92.3e-10117201183
                                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 
                                f+k+l ++ ++ +++l++p+++ae++       +      ++l+ +d sg+ W ++++   +++r+ l+    +F+ ++++ +g
  Oropetium_20150105_26561A 117 FCKKLRTAETMGHSWLSIPRNHAEKClppldmtQRA--PVQELVAKDVSGQMWHFQHR-LVRPRRHRLQ--AADFATSKNIVAG 195
                                89****************************965333..3458***************6.6677788899..89*********** PP

                                -EEEEE CS
                         B3  78 DfvvFk 83 
                                D +v+ 
  Oropetium_20150105_26561A 196 DALVIL 201
                                ***987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-18113204IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.11E-14114203IPR015300DNA-binding pseudobarrel domain
CDDcd100174.00E-11115203No hitNo description
SMARTSM010190.0055117219IPR003340B3 DNA binding domain
PfamPF023625.4E-8117201IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MTSLEIADTS FYDSKDDKHI TEDLWYACAG SGATIPQVGE LVVYFPQGHL EQTGGVPKHL  60
HGVPSQILCR VLNVELKSKK DFVYAWLVLQ PELSDGLEAS GKMGLPPPVR RVNVPFFCKK  120
LRTAETMGHS WLSIPRNHAE KCLPPLDMTQ RAPVQELVAK DVSGQMWHFQ HRLVRPRRHR  180
LQAADFATSK NIVAGDALVI LREPPFMTEN ISMELISKDK DATTFSSCCN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A2e-402020219212Auxin response factor 1
4ldw_A2e-402020219212Auxin response factor 1
4ldw_B2e-402020219212Auxin response factor 1
4ldx_A2e-402020219212Auxin response factor 1
4ldx_B2e-402020219212Auxin response factor 1
4ldy_A1e-402020219212Auxin response factor 1
4ldy_B1e-402020219212Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_26561A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020261175.18e-47auxin response factor 2-like isoform X1
RefseqXP_020261177.18e-47auxin response factor 2-like isoform X2
SwissprotQ6YVY02e-46ARFG_ORYSJ; Auxin response factor 7
TrEMBLA0A287MFV33e-46A0A287MFV3_HORVV; Auxin response factor
STRINGPavir.J07690.1.p3e-91(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3774322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.31e-42auxin response factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]