PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_26821A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

WOX

Protein Properties

Length: 248aa MW: 27184.2 Da PI: 9.1183

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_26821A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	64.2	1.9e-20	6	66	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++t+eql +Lee++++ r+p+a+e+++++++l +++ +++++WFqN++a+e++ Oropetium_20150105_26821A 6 STRWCPTPEQLMILEEMYRSgVRTPNAAEIQQITAHLayygRIEGKNIFYWFQNHKARERQ 66 58***************99************************************97 PP
2	Wus_type_Homeobox	119.1	1.9e-38	5	67	2	64
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 ++tRW+PtpeQ++iLee+y+sG+rtPn++eiq+ita+L+ yG+ie+kN+fyWFQN+kaRerq+ Oropetium_20150105_26821A 5 PSTRWCPTPEQLMILEEMYRSGVRTPNAAEIQQITAHLAYYGRIEGKNIFYWFQNHKARERQR 67 689***********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	10.365	2	67	IPR001356	Homeobox domain
SMART	SM00389	1.0E-5	4	71	IPR001356	Homeobox domain
CDD	cd00086	4.70E-4	5	60	No hit	No description
Pfam	PF00046	4.1E-18	6	66	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.1E-11	7	67	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.7E-7	8	66	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MPQTPSTRWC PTPEQLMILE EMYRSGVRTP NAAEIQQITA HLAYYGRIEG KNIFYWFQNH 60 KARERQRLRR RLCARHQQQY LPASSHPPAI SNTLPSSPVX XXXXXXXXXX PPAPAMVHPS 120 YATSFIMPQQ AHHHLGYLGQ QTAALPVVQH HPAAAPATGG GGGGNKXXXX XXXXXXXNSS 180 QQQEWTEPNC CSASPGSSDN GGLQLQLPPC CRRPLKTLDL FPIKTSTGGL KDECSSSKSS 240 SCSTSTT*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor required to initiate organ founder cells in a lateral domain of shoot meristems. Involved in leaf formation. {ECO:0000269\|PubMed:15169755}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_26821A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU969087	4e-88	EU969087.1 Zea mays clone 325979 WUSCHEL-related homeobox 3B mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001105160.1	2e-62	WUSCHEL-related homeobox 3A
Swissprot	Q70UV1	1e-63	WOX3A_MAIZE; WUSCHEL-related homeobox 3A
TrEMBL	B6TVS2	1e-61	B6TVS2_MAIZE; WUSCHEL-related homeobox 3B
STRING	GRMZM2G069028_P01	6e-62	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2177	38	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28610.1	1e-34	WOX family protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_26821A

Publications ? help Back to Top
Scanlon MJ NARROW SHEATH1 functions from two meristematic foci during founder-cell recruitment in maize leaf development. Development, 2000. 127(21): p. 4573-85 [PMID:11023861]