PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_26940A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NF-YB
Protein Properties Length: 142aa    MW: 15582.6 Da    PI: 5.8059
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_26940AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB177.21.5e-5517112297
                      NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85 
                                +eqdr+lPianv+rimk++lP nakisk+aket+qecvsefisfvt+easdkc++ekrkt+ngdd++wa++ lGf+dyv+p++ 
  Oropetium_20150105_26940A  17 KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDVCWAFGALGFDDYVDPMRR 100
                                89********************************************************************************** PP

                      NF-YB  86 ylkkyrelegek 97 
                                yl+kyre+eg++
  Oropetium_20150105_26940A 101 YLHKYREVEGDR 112
                                **********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.2E-5014117IPR009072Histone-fold
SuperFamilySSF471135.9E-3919118IPR009072Histone-fold
PfamPF008083.2E-272285IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.3E-175068No hitNo description
PROSITE patternPS0068505369IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.3E-176987No hitNo description
PRINTSPR006151.3E-1788106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MADQPDGRPG AAADEIKEQD RLLPIANVGR IMKQILPPNA KISKEAKETM QECVSEFISF  60
VTGEASDKCH KEKRKTVNGD DVCWAFGALG FDDYVDPMRR YLHKYREVEG DRAAAAASSR  120
GPPPTLAPGL LDRAGPNYFC SP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A2e-4316107697NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_26940A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9701981e-138EU970198.1 Zea mays clone 342117 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635864.15e-69nuclear transcription factor Y subunit B-1
RefseqXP_015635872.15e-69nuclear transcription factor Y subunit B-1
SwissprotO822482e-56NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A0D3EYD41e-67A0A0D3EYD4_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0JTD02e-67A0A0E0JTD0_ORYPU; Uncharacterized protein
TrEMBLA0A0E0N7B51e-67A0A0E0N7B5_ORYRU; Uncharacterized protein
TrEMBLI1NUZ71e-67I1NUZ7_ORYGL; Uncharacterized protein
TrEMBLQ942Y51e-67Q942Y5_ORYSJ; HAP3 subunit of HAP complex
STRINGORUFI01G46550.12e-68(Oryza rufipogon)
STRINGOS01T0935200-012e-68(Oryza sativa)
STRINGOPUNC01G42210.13e-68(Oryza punctata)
STRINGORGLA01G0368700.12e-68(Oryza glaberrima)
STRINGOBART01G43130.12e-68(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29173887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.14e-58nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]