PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_27029A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

HRT-like

Protein Properties

Length: 354aa MW: 39357.7 Da PI: 10.4543

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_27029A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	56.5	4.5e-18	298	328	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 +CGv ledGs C ++Pv+gRKRC HKG+R+ Oropetium_20150105_27029A 298 VCGVVLEDGSSCLEEPVQGRKRCNLHKGRRV 328 7*****************************7 PP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:2000033	Biological Process	regulation of seed dormancy process
GO:0097100	Molecular Function	supercoiled DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MPAAAAAARL KREDCPRTKH DSLFSPWKVL VGASDWEDHS SGKEGVQRYR IRNLPDNFLA 60 STSWASPAPP TRRRDSRGVV VVYLGQADNV RARLQQYGRT GSHLDTGNSA GKDEVDALTA 120 EPGLFREVFA RGYSMVFRCA LMDNKQVAEK TEAQLLRVFD YAWNKLQNGA CRREEILLKL 180 EYRAVSHASS LLSRVHDMKQ KIFGEKPGIK IKGSGSIETS SGIMSSMLPR VRTLVRFRPH 240 LVNSDNGGSE AIDVVLNRPY HGHTSGNRQP HGRRSEGYKV KRIDVTKRRT VPIQNSSVCG 300 VVLEDGSSCL EEPVQGRKRC NLHKGRRVKG NPKSSSSSFV CQVEVPNMNL YLN*

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MPAAAAAARL KREDCPRTKH DSLFSPWKVL VGASDWEDHS SGKEGVQRYR IRNLPDNFLA  60
STSWASPAPP TRRRDSRGVV VVYLGQADNV RARLQQYGRT GSHLDTGNSA GKDEVDALTA  120
EPGLFREVFA RGYSMVFRCA LMDNKQVAEK TEAQLLRVFD YAWNKLQNGA CRREEILLKL  180
EYRAVSHASS LLSRVHDMKQ KIFGEKPGIK IKGSGSIETS SGIMSSMLPR VRTLVRFRPH  240
LVNSDNGGSE AIDVVLNRPY HGHTSGNRQP HGRRSEGYKV KRIDVTKRRT VPIQNSSVCG  300
VVLEDGSSCL EEPVQGRKRC NLHKGRRVKG NPKSSSSSFV CQVEVPNMNL YLN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_27029A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002463101.1	0.0	protein EFFECTOR OF TRANSCRIPTION 2
TrEMBL	A0A3L6TB25	0.0	A0A3L6TB25_PANMI; Uncharacterized protein
STRING	Sb02g037860.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7948	34	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	2e-53	effector of transcription2

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_27029A