PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_27030A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family HRT-like
Protein Properties Length: 163aa    MW: 17506.2 Da    PI: 10.0395
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_27030AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like53.73.5e-17124152230
                   HRT-like   2 CGviledGsvCkrqPvkgRKRCeeHKGmR 30 
                                CG++++dGs+C++ Pv+gRKRC+ HKG+R
  Oropetium_20150105_27030A 124 CGARTSDGSPCMNRPVEGRKRCALHKGQR 152
                                ****************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MVKKLDATVK GSSTQSSSCE AKVVKLENLL PKTLHMKPLG LGILASMGRI QEQPSGRIWF  60
ELIKHRKFGR PECPTRVADD VAPICGATTD NGSFRASRDG CEKLSEMTVT GVSYSRRSGW  120
PCNCGARTSD GSPCMNRPVE GRKRCALHKG QRASCSPIAL VA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_27030A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004987414.13e-34protein EFFECTOR OF TRANSCRIPTION 2-like
TrEMBLA0A0A9PBU52e-38A0A0A9PBU5_ARUDO; Uncharacterized protein
STRINGPavir.Ba01074.1.p7e-35(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79483443