PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_27225A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

bHLH

Protein Properties

Length: 277aa MW: 30462.2 Da PI: 8.6766

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_27225A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.6	1.4e-05	42	90	2	54
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + + erE+ Rd++N+ f eL ++l + + Ka+iL A + +++L Oropetium_20150105_27225A 42 KNHKAEREKLKRDQLNDLFLELSSMLDLD----RQNSGKASILGDAARVLRDL 90 677899********************997....45566788888888888776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	9.2E-8	38	108	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.13E-4	38	95	No hit	No description
SuperFamily	SSF47459	8.64E-11	38	104	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.084	40	90	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.7E-4	46	96	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MAFLSSVVVE FCSRAPSASI MDCSNCHLRH SDQRSQEKTP KKNHKAEREK LKRDQLNDLF 60 LELSSMLDLD RQNSGKASIL GDAARVLRDL VTQVESLRKE QSALLAERQY VSSEKNELLE 120 ENTTIKARIS ELQNELRTRM GNNSISLSSI GMSHAMANAT NPSLPTQPMQ HQLWSSIPNL 180 SSVPMTHATH TVSPLHSQQH RPAVVGQVHE SRPQELQLFP GTSSLAEREC ANLRSAPTST 240 SSMTDPLPGQ LQLSLPQSSQ GGSSSSASRS RTERKN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_27225A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025826529.1	1e-105	transcription factor BHLH062-like isoform X1
TrEMBL	A0A0A9CGL0	1e-120	A0A0A9CGL0_ARUDO; Uncharacterized protein
STRING	Pavir.Ha00418.1.p	1e-102	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12959	21	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47640.3	8e-34	bHLH family protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_27225A