PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_27452A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family M-type_MADS
Protein Properties Length: 192aa    MW: 20697.6 Da    PI: 10.4294
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_27452AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF64.21.4e-201757242
                               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                               rie++  rqv fskRr+g++KKA+ELS+LC+a+va ++fs+
  Oropetium_20150105_27452A 17 RIESDEARQVCFSKRRAGLFKKASELSTLCGADVAAVVFSP 57
                               8**************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.422860IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.92E-23862IPR002100Transcription factor, MADS-box
SMARTSM004321.4E-28867IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-161030IPR002100Transcription factor, MADS-box
PfamPF003191.6E-231760IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-163045IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-164566IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MAPRRPSMGR QKIEIRRIES DEARQVCFSK RRAGLFKKAS ELSTLCGADV AAVVFSPPAR  60
PSPSGTHPAA AGLTSAGDRA VSELNRQYGE LRALLDAEKA RQERADEAMR KERAANSPAM  120
ALIDPDLGAM RYYELVAFER ALTSVQAAVR ASADQLLRDA LLVDMMGRRG RQSATPQLAG  180
AGRGGGVLDF NN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. {ECO:0000269|PubMed:18599653, ECO:0000269|PubMed:18713950}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_27452A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9626541e-84EU962654.1 Zea mays clone 244495 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806827.15e-79agamous-like MADS-box protein AGL29
SwissprotQ4PSU41e-20AGL61_ARATH; Agamous-like MADS-box protein AGL61
TrEMBLA0A1E5VA384e-79A0A1E5VA38_9POAL; Agamous-like MADS-box protein AGL61
STRINGPavir.J11717.1.p8e-79(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122436128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.16e-23AGAMOUS-like 61
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]