PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_27539A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

TCP

Protein Properties

Length: 250aa MW: 26508.2 Da PI: 10.256

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_27539A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	62.6	1.5e-19	47	90	3	46
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsk 46 g+kdrhsk+ T +g+RdRRvRls+++a++++dLqd+LG+ ++sk Oropetium_20150105_27539A 47 GGKDRHSKVRTVKGLRDRRVRLSVPTAIQLYDLQDRLGLSQPSK 90 78*****************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	17.006	48	106	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	5.5E-18	48	90	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MISGNHTNEE LARCRKAEQQ PGAAVASSRH WPPSTESRIV RVSRVFGGKD RHSKVRTVKG 60 LRDRRVRLSV PTAIQLYDLQ DRLGLSQPSK FPPTHAQDLV XXXXXXXXXX FASAASAAVL 120 DGDKSVGGSI KGLMGLNNSV NGLVNGGAMP LAHGLFFAGG ESWTSGGGSV HDQVSHGNSP 180 QQPTVAHHSP FSSLLSLAPR PQLVFYSPEG GAFAMKEAPD QFPVDNLEHS QGLLSLSSAR 240 SFLHSGSQG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_27539A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU968908	9e-80	EU968908.1 Zea mays clone 324906 TCP family transcription factor containing protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004961521.1	1e-108	transcription factor TCP13 isoform X1
Refseq	XP_004961522.1	1e-108	transcription factor TCP13 isoform X1
Refseq	XP_012700333.1	1e-108	transcription factor TCP13 isoform X1
TrEMBL	K3Z8G3	1e-107	K3Z8G3_SETIT; Uncharacterized protein
STRING	Si022830m	1e-108	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2490	35	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02150.1	9e-28	plastid transcription factor 1

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_27539A