PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_27721A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

C3H

Protein Properties

Length: 119aa MW: 13528.9 Da PI: 4.8669

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_27721A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	29.2	1.5e-09	2	30	1	25
--S---SGGGGTS....--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartG....tCkyGdrCkFaH 25 +kt+lC++f+r G C++G++C++aH Oropetium_20150105_27721A 2 WKTSLCSYFRRRGagaeGCSHGESCRYAH 30 8**************************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	13.469	1	33	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0014	1	32	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.27E-6	2	37	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	9.3E-12	2	38	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.6E-7	2	30	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 119 aa Download sequence Send to blast
MWKTSLCSYF RRRGAGAEGC SHGESCRYAH TEEELRPRPD GTWDPTSDRA KKLRKVDSEA 60 QEAEDEVTVD EQSLDKCLVG LPRGWTADRL KAFLQDQARN LICNSEEEEG NDCRFCHF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_27721A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025824350.1	6e-51	zinc finger CCCH domain-containing protein 24
TrEMBL	A0A1D6J2T8	2e-52	A0A1D6J2T8_MAIZE; Zinc finger CCCH domain-containing protein 24
TrEMBL	A0A3L6PT31	1e-51	A0A3L6PT31_PANMI; Zinc finger CCCH domain-containing protein 24
STRING	Pavir.J22522.1.p	1e-50	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP56019	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28450.2	8e-26	C3H family protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_27721A