PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_27917A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NAC
Protein Properties Length: 130aa    MW: 14242.8 Da    PI: 11.1561
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_27917AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM41.63.8e-1318119598
                        NAM   5 frFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpk.......kvkaeekewyfFskrdkkyatgkrknr..at 78 
                                f+ hP+d elv  yL++ v++ + ++++  +++    +  P    +        ++ +e+ wyf ++ ++k+++gkrk r  at
  Oropetium_20150105_27917A  18 FHSHPSDLELVESYLRPWVDSASRPAASStFPTSTPPDPPP----SpgtsrpaDAQDGERAWYFLTPLRRKSERGKRKVRtvAT 97 
                                6679*****************99777332244433333333....233445556777899********************7668 PP

                        NAM  79 ksgyWkatgkdkevlsk..kge 98 
                                 +g W++  k+k+v+++  +++
  Oropetium_20150105_27917A  98 GEGWWHNEAKSKPVIDAldGRR 119
                                89************98655444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100516.89614129IPR003441NAC domain
PfamPF023652.1E-918113IPR003441NAC domain
SuperFamilySSF1019411.96E-1318123IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MGRSPSPPAN DRPPRAPFHS HPSDLELVES YLRPWVDSAS RPAASSTFPT STPPDPPPSP  60
GTSRPADAQD GERAWYFLTP LRRKSERGKR KVRTVATGEG WWHNEAKSKP VIDALDGRRH  120
VGTARPSRS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_27917A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817187.17e-37protein ATAF2-like
TrEMBLA0A2S3HSV72e-35A0A2S3HSV7_9POAL; Uncharacterized protein
TrEMBLA0A2T7DII92e-35A0A2T7DII9_9POAL; Uncharacterized protein
STRINGPavir.J36802.1.p2e-35(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40112972