PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_28178A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family WRKY
Protein Properties Length: 211aa    MW: 22446.9 Da    PI: 11.7625
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_28178AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY43.56.4e-14691151659
                                TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY  16 kgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                                +g+   r+Y+rCt++   gC++ k+v+r++ dp +++++Y+g+H++ 
  Oropetium_20150105_28178A  69 TGQSKKRAYFRCTHRhtqGCQASKQVQRADGDPLLFDVVYHGDHTCA 115
                                678899********98999**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081112.43849112IPR003657WRKY domain
SuperFamilySSF1182908.89E-1364115IPR003657WRKY domain
PfamPF031067.4E-1468114IPR003657WRKY domain
SMARTSM007747.2E-1368116IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-1369117IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MATMRASIDR SVHIARSFYA AEAAGGRLLX XXXXXXXXXX XXXXXXXXXX RSTGSDQAAG  60
ESRGRGIATG QSKKRAYFRC THRHTQGCQA SKQVQRADGD PLLFDVVYHG DHTCAQVQAQ  120
AAAHLGNTTA NARRTPSSSR SRRGAGAGHL RFFVPNVRAH RAADDPTKTS PLPTTAPARR  180
GGGFPAAGCL IAAFVRFHGD GNDKAGVSAR *
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_28178A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032128e-49AP003212.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0049H05.
GenBankAP0032948e-49AP003294.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0694A04.
GenBankAP0149578e-49AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankAY6769268e-49AY676926.1 Oryza sativa (indica cultivar-group) transcription factor WRKY98 (WRKY98) mRNA, complete cds.
GenBankCP0126098e-49CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969356.14e-25probable WRKY transcription factor 53
TrEMBLA0A0A9VEZ76e-28A0A0A9VEZ7_ARUDO; Uncharacterized protein
STRINGSi002203m1e-24(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33553183
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.21e-15WRKY family protein