PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_28195A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C2H2
Protein Properties Length: 252aa    MW: 26669.8 Da    PI: 8.7066
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_28195AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.00037151170120
                                EEETTTTEEESSHHHHHHHH CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                                ++C+ CgksF++   L  H 
  Oropetium_20150105_28195A 151 HECHVCGKSFPTGQALGGHK 170
                                79*********988886665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139124.6E-1389114IPR007087Zinc finger, C2H2
SuperFamilySSF576673.58E-890112No hitNo description
PROSITE profilePS5015711.2490117IPR007087Zinc finger, C2H2
SMARTSM003550.0890112IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028092112IPR007087Zinc finger, C2H2
SuperFamilySSF576673.58E-8146173No hitNo description
PfamPF139122.2E-13150175IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.18151173IPR007087Zinc finger, C2H2
SMARTSM003550.074151173IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280153173IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009737Biological Processresponse to abscisic acid
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010200Biological Processresponse to chitin
GO:0042538Biological Processhyperosmotic salinity response
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MAVEALLDAA AVVPPPPSSS SSPATSDEAS EPPSSISTAA GKRRRSRPSS RLQHQGRRRE  60
PVTEEEHLAL CLVMLARGRR DLFHDDDLVH ACSVCGKAFA SYQALGGHKA SHRKPAPAXX  120
XXXXXXXXXP QVIMTTTPTA TAPTTTTTPA HECHVCGKSF PTGQALGGHK RCHYDGTIGS  180
AAAPARXXXX XXXXXXXQGG RASRTAPNTV GLIDLNLPAL PAAERYCTAA EDEEVLSPMA  240
AFKKPRLMIP A*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_28195A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9557421e-38EU955742.1 Zea mays clone 1544525 zinc-finger protein 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808181.12e-56zinc finger protein 1-like
TrEMBLA0A3L6R6995e-56A0A3L6R699_PANMI; Zinc finger protein 1-like
STRINGPavir.J06981.1.p2e-51(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102236113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19580.23e-34zinc-finger protein 2