PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_28222A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C2H2
Protein Properties Length: 196aa    MW: 21011 Da    PI: 8.3743
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_28222AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.00174163123
                               EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                               ++C+ C++ F++   L  H  +H
  Oropetium_20150105_28222A 41 FECKTCSRQFPTFQALGGHRASH 63
                               89**********99999998887 PP
2zf-C2H211.60.00089104126123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                ++Cp Cg  F     L  H+r+H
  Oropetium_20150105_28222A 104 HECPVCGLEFAVGQALGGHMRRH 126
                                79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.44E-83963No hitNo description
PfamPF139121.4E-124065IPR007087Zinc finger, C2H2
PROSITE profilePS501579.7234168IPR007087Zinc finger, C2H2
SMARTSM003550.384163IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804363IPR007087Zinc finger, C2H2
SuperFamilySSF576673.44E-899126No hitNo description
PfamPF139122.9E-10103128IPR007087Zinc finger, C2H2
PROSITE profilePS501579.452104131IPR007087Zinc finger, C2H2
SMARTSM003550.13104126IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280106126IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MSKRDRPAAW EEETARVLLL TSSRGGGEGN NNNNNSGRRV FECKTCSRQF PTFQALGGHR  60
ASHKRPRLLH QPAVEHAELC LGLGQRQPLL LPPPQQPANK PRVHECPVCG LEFAVGQALG  120
GHMRRHRAAE ADEAQAPITT TKACCDVDVG VCLDLNLTPS ENCAQCRNVL LVRGGGVAAQ  180
QGAVHKALAM LDCSL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_28222A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ2442411e-35DQ244241.1 Zea mays clone 3770 mRNA sequence.
GenBankEU9702191e-35EU970219.1 Zea mays clone 342364 zinc finger, C2H2 type family protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970514.11e-58zinc finger protein ZAT12
TrEMBLA0A3L6SKA74e-62A0A3L6SKA7_PANMI; Zinc finger protein ZAT12
STRINGPavir.J34723.1.p4e-67(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62822138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.15e-28C2H2 family protein