PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_28324A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family WRKY
Protein Properties Length: 188aa    MW: 21480 Da    PI: 9.2462
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_28324AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY59.27.7e-1969128358
                                -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSS.TTEEEEEEES--SS CS
                       WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaed.pkvveitYegeHnh 58 
                                Dg+ WrKYGqK++k++e+pr YYrC+++   +C +   +++++++ p + ++tY+ eH++
  Oropetium_20150105_28324A  69 DGHLWRKYGQKKIKDAEYPRLYYRCSYRddrNCLASMLLQQQNSEvPPLYHVTYTYEHTC 128
                                9**************************99999*****9998876637899********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.5E-1957131IPR003657WRKY domain
SuperFamilySSF1182901.03E-1860131IPR003657WRKY domain
SMARTSM007746.0E-2767130IPR003657WRKY domain
PROSITE profilePS5081115.69869131IPR003657WRKY domain
PfamPF031063.8E-2069128IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MASPRMKSEQ SFDFGDSSIQ DAMGSASESY SPPGTRFGLS PLDSSPPDGR RRRRDRPTWS  60
QYTYTPYLDG HLWRKYGQKK IKDAEYPRLY YRCSYRDDRN CLASMLLQQQ NSEVPPLYHV  120
TYTYEHTCGA PPIRMPDIDV VVEQHQPPAA RMEGLVLRFD SPSAATTMKR GSSTMQPSRL  180
QQTRTQQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_28324A
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002456547.11e-73probable WRKY transcription factor 30
TrEMBLC5XNA03e-72C5XNA0_SORBI; Uncharacterized protein
STRINGSb03g038180.14e-73(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115292433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01900.17e-17WRKY DNA-binding protein 62