PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_28398A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family B3
Protein Properties Length: 99aa    MW: 11244.7 Da    PI: 9.5535
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_28398AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B381.76.9e-262797183
                               EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                         B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83
                               f+kv tpsdv+k++rlv+pk++ae+            +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F 
  Oropetium_20150105_28398A 27 FDKVVTPSDVGKLNRLVIPKQHAES------------FEDRTGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFG 97
                               89*********************54............5799****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-282298IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.22E-262497IPR015300DNA-binding pseudobarrel domain
CDDcd100171.39E-222596No hitNo description
PfamPF023624.3E-222797IPR003340B3 DNA binding domain
SMARTSM010191.8E-92799IPR003340B3 DNA binding domain
PROSITE profilePS5086311.7165299IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 99 aa     Download sequence    Send to blast
MEFAAAGPIR SGGDVDDAVV VEKEHMFDKV VTPSDVGKLN RLVIPKQHAE SFEDRTGKPW  60
RFRYSYWNSS QSYVMTKGWS RFVKEKRLDA GDTVSFGRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-412098195B3 domain-containing transcription factor NGA1
5os9_B1e-412098195B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_28398A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3666017e-69AK366601.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2044K15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022678485.16e-52B3 domain-containing protein Os03g0120900
SwissprotQ8LMR92e-49Y3209_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBLA0A3L6TKR23e-53A0A3L6TKR2_PANMI; B3 domain-containing protein
STRINGSi036864m2e-51(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01030.14e-44B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]