PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100000360031

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

HD-ZIP

Protein Properties

Length: 242aa MW: 28121.3 Da PI: 4.665

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100000360031	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.9	9.5e-20	70	123	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++++q++ Le++Fe ++++ ae++ +LAk+lgL+ rqV +WFqNrRa++k Ote100000360031\|100000360031 70 KKRRLSHDQVHFLEKCFEVENKLEAERKIQLAKELGLQPRQVAIWFQNRRARYK 123 56689************************************************9 PP
2	HD-ZIP_I/II	122.2	2.6e-39	69	160	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 ekkrrls++qv++LE++Fe e+kLe erK +la+eLglqprqva+WFqnrRAR+ktk lEk+y +Lk++yd+lk + ++L Ote100000360031\|100000360031 69 EKKRRLSHDQVHFLEKCFEVENKLEAERKIQLAKELGLQPRQVAIWFQNRRARYKTKVLEKEYGSLKASYDKLKLDYDALV 149 69***************************************************************************** PP HD-ZIP_I/II 82 keveeLreelk 92 ke+e++++e++ Ote100000360031\|100000360031 150 KEKENMKNEVN 160 *****9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.17E-19	62	125	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.167	65	125	IPR001356	Homeobox domain
SMART	SM00389	1.1E-18	68	129	IPR001356	Homeobox domain
Pfam	PF00046	6.3E-17	70	123	IPR001356	Homeobox domain
CDD	cd00086	4.45E-16	70	125	No hit	No description
Gene3D	G3DSA:1.10.10.60	5.7E-19	72	132	IPR009057	Homeodomain-like
PRINTS	PR00031	4.6E-6	96	105	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	100	123	IPR017970	Homeobox, conserved site
PRINTS	PR00031	4.6E-6	105	121	IPR000047	Helix-turn-helix motif
Pfam	PF02183	6.1E-14	125	166	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
MNDSRMANLL LKSESSEVLE SLWVPNSSPP FHASASMAQL EDENTSEKAF DTKPENCNEE 60 FDVCFHQAEK KRRLSHDQVH FLEKCFEVEN KLEAERKIQL AKELGLQPRQ VAIWFQNRRA 120 RYKTKVLEKE YGSLKASYDK LKLDYDALVK EKENMKNEVN LLTEKLATRE KKEKANSSEM 180 KQEEAVSWAK SDVLDSDTDG NNSDSCQEED GFPKLEMEDY LQPNSCNLGF PVQDQGTWFW 240 QY

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011071034.1	6e-98	homeobox-leucine zipper protein HAT5-like
TrEMBL	A0A4D9BNR6	1e-103	A0A4D9BNR6_SALSN; Homeobox-leucine zipper protein
STRING	XP_009766848.1	8e-79	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA825	24	95