PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100001350021
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family M-type_MADS
Protein Properties Length: 99aa    MW: 10805 Da    PI: 10.4773
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100001350021genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.77.3e-291059251
                                  ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                        SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                  ri+n++ rqvtfskRr g+lKKA+EL +LCda+v viifsstgklye+s+
  Ote100001350021|100001350021 10 RIDNSTSRQVTFSKRRSGLLKKAKELAILCDAQVGVIIFSSTGKLYEFSN 59
                                  9***********************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.908161IPR002100Transcription factor, MADS-box
SMARTSM004325.0E-39160IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.97E-28261IPR002100Transcription factor, MADS-box
CDDcd002651.32E-35260No hitNo description
PRINTSPR004043.0E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003194.9E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-283859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 99 aa     Download sequence    Send to blast
MGRGKIVIQR IDNSTSRQVT FSKRRSGLLK KAKELAILCD AQVGVIIFSS TGKLYEFSNT  60
RLSLFCMESS LKEAILGGYI GLILLKCGGI VLLALLLIL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-18163163MEF2C
5f28_B4e-18163163MEF2C
5f28_C4e-18163163MEF2C
5f28_D4e-18163163MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional factor that targets the CArG motif 5'-C(A/T)TTAAAAAG-3' in the promoter of D14. Directly suppresses D14 expression to control the outgrowth of axillary buds. {ECO:0000269|PubMed:23463009}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022039893.13e-33MADS-box transcription factor 23-like isoform X1
RefseqXP_022039894.13e-33MADS-box transcription factor 23-like isoform X1
RefseqXP_022039895.13e-33MADS-box transcription factor 23-like isoform X1
RefseqXP_022039897.13e-33MADS-box transcription factor 23-like isoform X1
RefseqXP_022039898.13e-33MADS-box transcription factor 23-like isoform X2
RefseqXP_024976856.12e-33MADS-box transcription factor 27-like isoform X5
SwissprotQ6Z6W27e-33MAD57_ORYSJ; MADS-box transcription factor 57
TrEMBLA0A4D8YSR83e-33A0A4D8YSR8_SALSN; MADS-box transcription factor, plant
TrEMBLK7XJ902e-33K7XJ90_AQUCA; MADS-box protein AGL17
STRINGAquca_010_00060.13e-34(Aquilegia coerulea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Publications ? help Back to Top
  1. Guo S, et al.
    The interaction between OsMADS57 and OsTB1 modulates rice tillering via DWARF14.
    Nat Commun, 2013. 4: p. 1566
    [PMID:23463009]
  2. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  3. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]
  4. Wang H, et al.
    A Signaling Cascade from miR444 to RDR1 in Rice Antiviral RNA Silencing Pathway.
    Plant Physiol., 2016. 170(4): p. 2365-77
    [PMID:26858364]