PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100001550121

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

MYB

Protein Properties

Length: 179aa MW: 20561 Da PI: 6.1471

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100001550121	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.2	8.8e-09	15	61	3	47
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 rWT eEd+++ + ++ + +W++Ia+++g ++++ ++ ++ + Ote100001550121\|100001550121 15 RWTWEEDKQFEVCLVEFAQDsanRWDRIAARLG-TKSAAEVERHYAVL 61 9**************999*********.********9765 PP
2	Myb_DNA-binding	48.2	2.5e-15	109	153	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ + +++G+g+Wk+I+r++ ++R + q+ s+ qk+ Ote100001550121\|100001550121 109 PWTEEEHRLFLLGLEKYGKGDWKSISRYVVLTRNPTQVASHAQKH 153 8******************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	3.8E-7	12	64	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	6.516	14	62	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	5.5E-5	14	62	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.56E-10	15	69	IPR009057	Homeodomain-like
Pfam	PF00249	1.2E-7	15	61	IPR001005	SANT/Myb domain
CDD	cd00167	3.02E-6	15	62	No hit	No description
PROSITE profile	PS51294	18.647	102	158	IPR017930	Myb domain
SuperFamily	SSF46689	1.31E-16	103	159	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.2E-14	105	157	IPR006447	Myb domain, plants
SMART	SM00717	5.5E-12	106	156	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.1E-11	108	154	IPR009057	Homeodomain-like
CDD	cd00167	1.47E-9	109	154	No hit	No description
Pfam	PF00249	1.9E-12	109	153	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence Send to blast
MANTSESDSA AELSRWTWEE DKQFEVCLVE FAQDSANRWD RIAARLGTKS AAEVERHYAV 60 LLDDVAAIEA GMIEPPVYSE KDVAQSSEPQ SCPKIEKKQM SVQRKAGRPW TEEEHRLFLL 120 GLEKYGKGDW KSISRYVVLT RNPTQVASHA QKHFERQDKE DQNKKRRSIF DSSISETKL

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011095585.1	4e-97	transcription factor DIVARICATA-like
Swissprot	Q8S9H7	7e-44	DIV_ANTMA; Transcription factor DIVARICATA
TrEMBL	A0A4D9B7Y8	6e-98	A0A4D9B7Y8_SALSN; Uncharacterized protein
STRING	Migut.M01627.1.p	2e-92	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA14988	6	9

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]