PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100001860041

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

NAC

Protein Properties

Length: 184aa MW: 21353.8 Da PI: 4.7585

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100001860041	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	116.3	3.1e-36	1	118	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 +ppGfrF Ptdeelvv++L++k++ +++ +vi+++d+y ++PwdL+ k+ e ++wyfFs+r + +r+t+sg Ote100001860041\|100001860041 1 MPPGFRFYPTDEELVVHFLHRKAALLPCHP-DVIPDLDLYPYDPWDLDGKAMCEGSKWYFFSRRTQ--------SRITESG 72 79***********************999.99**********976677899**9854........799 PP NAM 82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 yW++ g +++++s +g+ vg+kk +f+ g+ ++g kt+W+m+eyrl Ote100001860041\|100001860041 73 YWQQVGIEEPIYS-GGQRVGIKKYSAFFLGQISQGAKTNWIMQEYRL 118 *********.99***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.06E-45	1	149	IPR003441	NAC domain
PROSITE profile	PS51005	44.335	1	150	IPR003441	NAC domain
Pfam	PF02365	3.8E-22	2	118	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010089	Biological Process	xylem development
GO:0043067	Biological Process	regulation of programmed cell death
GO:0048367	Biological Process	shoot system development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
MPPGFRFYPT DEELVVHFLH RKAALLPCHP DVIPDLDLYP YDPWDLDGKA MCEGSKWYFF 60 SRRTQSRITE SGYWQQVGIE EPIYSGGQRV GIKKYSAFFL GQISQGAKTN WIMQEYRLSD 120 SNSSTRSSSR RRSSRVVDYS KWVICRVYER NCDSDDDDGT QLSCLDEVFL SLDDLDEISL 180 PNYS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	8e-42	1	154	17	169	NO APICAL MERISTEM PROTEIN
1ut4_B	8e-42	1	154	17	169	NO APICAL MERISTEM PROTEIN
1ut7_A	8e-42	1	154	17	169	NO APICAL MERISTEM PROTEIN
1ut7_B	8e-42	1	154	17	169	NO APICAL MERISTEM PROTEIN
3swm_A	8e-42	1	154	20	172	NAC domain-containing protein 19
3swm_B	8e-42	1	154	20	172	NAC domain-containing protein 19
3swm_C	8e-42	1	154	20	172	NAC domain-containing protein 19
3swm_D	8e-42	1	154	20	172	NAC domain-containing protein 19
3swp_A	8e-42	1	154	20	172	NAC domain-containing protein 19
3swp_B	8e-42	1	154	20	172	NAC domain-containing protein 19
3swp_C	8e-42	1	154	20	172	NAC domain-containing protein 19
3swp_D	8e-42	1	154	20	172	NAC domain-containing protein 19
4dul_A	8e-42	1	154	17	169	NAC domain-containing protein 19
4dul_B	8e-42	1	154	17	169	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269\|PubMed:18069942, ECO:0000269\|PubMed:20458494}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027106335.1	2e-98	NAC domain-containing protein 104-like
Refseq	XP_027159802.1	2e-98	NAC domain-containing protein 104
Swissprot	Q8GWK6	1e-83	NC104_ARATH; NAC domain-containing protein 104
TrEMBL	A0A2G9FYG1	1e-100	A0A2G9FYG1_9LAMI; Uncharacterized protein
STRING	XP_009762857.1	7e-94	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3766	24	47

Publications ? help Back to Top
Zhao C, et al. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. New Phytol., 2017. 216(1): p. 76-89 [PMID:28742236] Tang N, et al. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 2018. 9(1): p. 3884 [PMID:30250259]