PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100001860042

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

NAC

Protein Properties

Length: 172aa MW: 19811 Da PI: 4.7195

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100001860042	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	116.6	2.5e-36	1	118	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 +ppGfrF Ptdeelvv++L++k++ +++ +vi+++d+y ++PwdL+ k+ e ++wyfFs+r + +r+t+sg Ote100001860042\|100001860042 1 MPPGFRFYPTDEELVVHFLHRKAALLPCHP-DVIPDLDLYPYDPWDLDGKAMCEGSKWYFFSRRTQ--------SRITESG 72 79***********************999.99**********976677899**9854........799 PP NAM 82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 yW++ g +++++s +g+ vg+kk +f+ g+ ++g kt+W+m+eyrl Ote100001860042\|100001860042 73 YWQQVGIEEPIYS-GGQRVGIKKYSAFFLGQISQGAKTNWIMQEYRL 118 *********.99***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	40.95	1	139	IPR003441	NAC domain
SuperFamily	SSF101941	1.44E-42	1	124	IPR003441	NAC domain
Pfam	PF02365	3.1E-22	2	118	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
MPPGFRFYPT DEELVVHFLH RKAALLPCHP DVIPDLDLYP YDPWDLDGKA MCEGSKWYFF 60 SRRTQSRITE SGYWQQVGIE EPIYSGGQRV GIKKYSAFFL GQISQGAKTN WIMQEYRLSD 120 SNSSTRSSSR RRSSRVVRNC DSDDDDGTQL SCLDEVFLSL DDLDEISLPN YS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	7e-38	1	126	17	153	NO APICAL MERISTEM PROTEIN
1ut4_B	7e-38	1	126	17	153	NO APICAL MERISTEM PROTEIN
1ut7_A	7e-38	1	126	17	153	NO APICAL MERISTEM PROTEIN
1ut7_B	7e-38	1	126	17	153	NO APICAL MERISTEM PROTEIN
3swm_A	6e-38	1	126	20	156	NAC domain-containing protein 19
3swm_B	6e-38	1	126	20	156	NAC domain-containing protein 19
3swm_C	6e-38	1	126	20	156	NAC domain-containing protein 19
3swm_D	6e-38	1	126	20	156	NAC domain-containing protein 19
3swp_A	6e-38	1	126	20	156	NAC domain-containing protein 19
3swp_B	6e-38	1	126	20	156	NAC domain-containing protein 19
3swp_C	6e-38	1	126	20	156	NAC domain-containing protein 19
3swp_D	6e-38	1	126	20	156	NAC domain-containing protein 19
4dul_A	7e-38	1	126	17	153	NAC domain-containing protein 19
4dul_B	7e-38	1	126	17	153	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269\|PubMed:18069942, ECO:0000269\|PubMed:20458494}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011092697.1	3e-88	NAC domain-containing protein 104 isoform X1
Refseq	XP_020553092.1	3e-88	NAC domain-containing protein 104 isoform X1
Refseq	XP_020553093.1	3e-88	NAC domain-containing protein 104 isoform X1
Swissprot	Q8GWK6	2e-72	NC104_ARATH; NAC domain-containing protein 104
TrEMBL	A0A2G9FYG1	2e-88	A0A2G9FYG1_9LAMI; Uncharacterized protein
STRING	XP_009762857.1	1e-82	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3766	24	47

Publications ? help Back to Top
Zhao C, et al. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. New Phytol., 2017. 216(1): p. 76-89 [PMID:28742236] Tang N, et al. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 2018. 9(1): p. 3884 [PMID:30250259]