PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100003020021

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

bHLH

Protein Properties

Length: 251aa MW: 28446.9 Da PI: 7.9706

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100003020021	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.6	1.3e-09	113	160	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Ote100003020021\|100003020021 113 SHSLAERVRREKISERMKLLQDLVPGC----DKVTGKALMLDEIINYVQSLQ 160 8***********************9....555***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.09E-16	107	176	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.01E-10	107	164	No hit	No description
Gene3D	G3DSA:4.10.280.10	7.9E-17	109	170	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.682	109	159	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.0E-7	113	160	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.1E-11	115	165	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MDRDYFPPSQ SWSSDRSFLN PNSFPNANNG GAITDLPNLA AKLSCRSFNG QLARLPLNSN 60 EESSACESGE TMKRKAISIK DERSNSPKEV EKTQKPPRDY IHVRARRGQA TDSHSLAERV 120 RREKISERMK LLQDLVPGCD KVTGKALMLD EIINYVQSLQ RQVEMFQQKT TPFHQMYPLD 180 SSAPAFYHNH NVQQQQLYAT NIISGPLGQC SVDSLPFDGF NQNIPQQLPD DLDSIVRMEF 240 VQNSVQNKTR T

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011089038.1	7e-58	transcription factor bHLH62 isoform X2
Swissprot	Q9SRT2	4e-44	BH062_ARATH; Transcription factor bHLH62
TrEMBL	A0A4D8ZHM1	8e-70	A0A4D8ZHM1_SALSN; Uncharacterized protein
STRING	POPTR_0002s24990.1	7e-53	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1057	23	83

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]