PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100003460061

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

NAC

Protein Properties

Length: 225aa MW: 24947.7 Da PI: 9.617

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100003460061	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	102.3	6.5e-32	12	85	54	128
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg+dk +++ +g++vg+kk Lvfy g+apkg+kt+W+mheyrl Ote100003460061\|100003460061 12 GEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIITT-EGRKVGIKKALVFYIGKAPKGTKTNWIMHEYRL 85 689********************************9999.999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	42.3	1	108	IPR003441	NAC domain
SuperFamily	SSF101941	2.09E-42	8	109	IPR003441	NAC domain
Pfam	PF02365	2.9E-15	15	85	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MSDSSPCKAL FGEKEWYFFS PRDRKYPNGS RPNRVAGSGY WKATGTDKII TTEGRKVGIK 60 KALVFYIGKA PKGTKTNWIM HEYRLSESPR KSGSSKLDDW VLCRIYKKNT SSHDRSAVAG 120 IRSNEYNHDS SSSSSSQYDD VLDSLPELDD PGLNPVWPEI QAQHGPVQPT NAIRNDGYAP 180 AADLMDSKSV NERVANSGIL QSGLTRGFSA SVDPFSGNQG FRFRQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	8e-66	6	113	66	173	NAC domain-containing protein 19
3swm_B	8e-66	6	113	66	173	NAC domain-containing protein 19
3swm_C	8e-66	6	113	66	173	NAC domain-containing protein 19
3swm_D	8e-66	6	113	66	173	NAC domain-containing protein 19
3swp_A	8e-66	6	113	66	173	NAC domain-containing protein 19
3swp_B	8e-66	6	113	66	173	NAC domain-containing protein 19
3swp_C	8e-66	6	113	66	173	NAC domain-containing protein 19
3swp_D	8e-66	6	113	66	173	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factors that bind specifically to the 5'-CATGTG-3' motif. {ECO:0000269\|PubMed:15319476}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Strongly induced by drought, high salinity and abscisic acid (ABA). Slightly up-regulated by cold treatment. Not induced by jasmonic acid. {ECO:0000269\|PubMed:15319476, ECO:0000269\|Ref.7}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011098342.1	6e-84	NAC domain-containing protein 72
Swissprot	Q93VY3	1e-74	NAC72_ARATH; NAC domain-containing protein 72
TrEMBL	A0A4D8YKK0	6e-82	A0A4D8YKK0_SALSN; Uncharacterized protein
STRING	Migut.H01915.1.p	5e-79	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3122	24	52

Publications ? help Back to Top
Zhu X, et al. Jasmonic acid promotes degreening via MYC2/3/4- and ANAC019/055/072-mediated regulation of major chlorophyll catabolic genes. Plant J., 2015. 84(3): p. 597-610 [PMID:26407000] Li S, et al. The role of ANAC072 in the regulation of chlorophyll degradation during age- and dark-induced leaf senescence. Plant Cell Rep., 2016. 35(8): p. 1729-41 [PMID:27154758] Ye H, et al. RD26 mediates crosstalk between drought and brassinosteroid signalling pathways. Nat Commun, 2017. 8: p. 14573 [PMID:28233777]