PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100004080051
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family CPP
Protein Properties Length: 189aa    MW: 21510.4 Da    PI: 8.2337
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100004080051genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR46.57.3e-152160242
                           TCR  2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42
                                  ++k+C+Ck+s+Clk+YCeCfa+g++C+  C+C +C+Nk+e+
  Ote100004080051|100004080051 21 KQKQCRCKNSRCLKLYCECFASGVYCDG-CNCINCFNKKEN 60
                                  89**************************.*********986 PP
2TCR53.16.2e-1784122240
                           TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                                   +++gCnCk++ ClkkYCeCf+a++ Cs++CkC dCkN e
  Ote100004080051|100004080051  84 HNRGCNCKRTGCLKKYCECFQANVLCSDKCKCMDCKNFE 122
                                   789**********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.7E-162060IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163431.28421123IPR005172CRC domain
PfamPF036381.9E-112257IPR005172CRC domain
SMARTSM011142.8E-1783124IPR033467Tesmin/TSO1-like CXC domain
PfamPF036383.4E-1386121IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MESPKSRDRS NFEQNDGTPK KQKQCRCKNS RCLKLYCECF ASGVYCDGCN CINCFNKKEN  60
EADRKEAIEA ILERKPDAFY GVDHNRGCNC KRTGCLKKYC ECFQANVLCS DKCKCMDCKN  120
FEGSEERKSR LYHHPADSMA FIQQANAAIN GAIGTPTKKS RIQHIGFDVA STRQFTSYHP  180
ESHQVLVEC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-27131372135Protein lin-54 homolog
5fd3_B1e-27131372135Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017440571.11e-72PREDICTED: protein tesmin/TSO1-like CXC 5 isoform X2
SwissprotQ9SL705e-66TCX6_ARATH; Protein tesmin/TSO1-like CXC 6
TrEMBLA0A4D9AT959e-96A0A4D9AT95_SALSN; Uncharacterized protein
STRINGGLYMA07G09380.23e-71(Glycine max)
STRINGXP_007152845.13e-71(Phaseolus vulgaris)
STRINGMigut.A00224.1.p5e-72(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24012455