PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100005070011
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB_related
Protein Properties Length: 186aa    MW: 19818.6 Da    PI: 10.9997
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100005070011genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding262.2e-0821571147
                                  HHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding 11 llvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                  l++ +  ++G+g+W++I+r +  +Rt+ q+ s+ qky
  Ote100005070011|100005070011 21 LFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKY 57
                                  6777889*****************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.87E-111963IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-111960IPR006447Myb domain, plants
CDDcd001671.25E-52058No hitNo description
PfamPF002492.6E-62157IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-62156IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MPINISTAIH SHLLACSKNR LFLLGLDKYG KGDWRSISRN FVVTRTPTQV ASHAQKYFIR  60
LNSMNKDRRR SSIHDITSVN SGDVSVPITG SAVGPLSGKL NNKPLPQSXX XXXXXXXXXX  120
XGMYGPPTMG QPIGGPLPLV SAVGTPVNLP PPPAHLAYGI GAPVHGSVVP GAPVNMAPMT  180
YPSGHR
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070471.16e-77transcription factor SRM1
RefseqXP_011070472.16e-77transcription factor SRM1
RefseqXP_020547442.16e-77transcription factor SRM1
RefseqXP_020547443.16e-77transcription factor SRM1
SwissprotQ9FNN64e-54SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A2R6PC125e-71A0A2R6PC12_ACTCH; Transcription factor DIVARICATA like
STRINGEOX990479e-70(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41492445
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]