PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100005070021
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB_related
Protein Properties Length: 131aa    MW: 14545.1 Da    PI: 4.7299
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100005070021genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.36.3e-121054345
                                  SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
               Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                                   W+ e d+++ +a++ ++ +   +W +Ia+ ++ g++ +++k+++ 
  Ote100005070021|100005070021 10 VWSREQDKQFEKAIASYPEDcsdRWQKIAADVP-GKSVEEVKHHYE 54
                                  7********************************.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.847661IPR017884SANT domain
SMARTSM007176.3E-9759IPR001005SANT/Myb domain
SuperFamilySSF466892.24E-12965IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-6959IPR009057Homeodomain-like
PfamPF002492.9E-101054IPR001005SANT/Myb domain
CDDcd001671.00E-91157No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MPADESSSSV WSREQDKQFE KAIASYPEDC SDRWQKIAAD VPGKSVEEVK HHYELLIDDV  60
KQIESGFVEV PCYNSSSDGS TSHASDEATG KKGGNSNSDA NHGGKSSRSD QERRKGIAWT  120
EDEHXXXXXX R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-18176176RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070471.13e-74transcription factor SRM1
RefseqXP_011070472.13e-74transcription factor SRM1
RefseqXP_020547442.13e-74transcription factor SRM1
RefseqXP_020547443.13e-74transcription factor SRM1
SwissprotQ9FNN62e-41SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A2G9HW372e-68A0A2G9HW37_9LAMI; Zuotin
STRINGXP_008221083.11e-61(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41492445
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]