PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100005090021

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

MYB_related

Protein Properties

Length: 195aa MW: 22509.2 Da PI: 5.3672

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100005090021	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.6	5.8e-18	22	67	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE+e +++++++lG++ W++Ia++++ gRt++++k+ w+++l Ote100005090021\|100005090021 22 RGNFTKEEEEAIINLHHMLGNR-WSAIAARLP-GRTDNEIKNVWHTHL 67 89******************.*****.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	4.135	1	16	IPR017877	Myb-like domain
SuperFamily	SSF46689	1.09E-22	3	75	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.8E-12	3	27	IPR009057	Homeodomain-like
PROSITE profile	PS51294	26.522	17	71	IPR017930	Myb domain
SMART	SM00717	1.0E-15	21	69	IPR001005	SANT/Myb domain
Pfam	PF00249	1.4E-16	22	67	IPR001005	SANT/Myb domain
CDD	cd00167	7.94E-12	24	67	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.9E-23	28	72	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
LLRCGKSCRL RWINYLKPDI KRGNFTKEEE EAIINLHHML GNRWSAIAAR LPGRTDNEIK 60 NVWHTHLKKK LKNNESSQDS KGHSIMSINS KCDNKDNFDT IVTTSPQRCS SEMSSLTDSS 120 TEKVAVKKEE VDYSSQYFPM MESFWSGDVT EMNREVDANV PLMENVDDSK VDDSSMDFWY 180 NLFIRAGDMP DLPEF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	2e-19	3	71	40	108	B-MYB
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Functional Description ? help Back to Top
Source	Description
UniProt	Acts as negative regulator of cold tolerance. Negatively regulates beta-amylase genes at the transcriptional level in response to cold stress. Suppresses beta-amylase gene expression by interacting with TIFY11A/JAZ9. Maltose produced by beta-amylases has a role in protecting cell membranes under cold stress conditions in rice and may contribute to the cold tolerance as a compatible solute. {ECO:0000269\|PubMed:28062835}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by cold stress and flooding. {ECO:0000269\|PubMed:28062835}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011091315.1	1e-93	myb-related protein Myb4
Swissprot	Q6K1S6	7e-48	MYB30_ORYSJ; Transcription factor MYB30
TrEMBL	A0A059PSM1	5e-97	A0A059PSM1_SALMI; MYB-related transcription factor
STRING	Migut.G00519.1.p	1e-75	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Yilmaz A, et al. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Plant Physiol., 2009. 149(1): p. 171-80 [PMID:18987217] Lv Y, et al. The OsMYB30 Transcription Factor Suppresses Cold Tolerance by Interacting with a JAZ Protein and Suppressing β-Amylase Expression. Plant Physiol., 2017. 173(2): p. 1475-1491 [PMID:28062835]