PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100007110101
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family LBD
Protein Properties Length: 153aa    MW: 16639.5 Da    PI: 9.0919
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100007110101genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260115.43.5e-3666153187
                        DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvi 80 
                                   +C aCk+lrrkC+ +C++ap+f ++q +++fa+vhk+FGasnv+kll ++p+++r+da+ ++ yeA+ar++dPvyG+v++i
  Ote100007110101|100007110101  66 PCGACKFLRRKCVGGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLLHIPPNRRHDAVVTISYEAQARLSDPVYGCVSTI 146
                                   7***********************9989***************************************************** PP

                        DUF260  81 lklqqql 87 
                                   l+lqqq+
  Ote100007110101|100007110101 147 LALQQQV 153
                                   *****96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.07365153IPR004883Lateral organ boundaries, LOB
PfamPF031955.7E-3666153IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:1900150Biological Processregulation of defense response to fungus
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MDVPAQGNGT PPESRRKGPX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXHAEAADG  60
PHPTAPCGAC KFLRRKCVGG CIFAPHFGSD QGAARFAAVH KVFGASNVSK LLLHIPPNRR  120
HDAVVTISYE AQARLSDPVY GCVSTILALQ QQV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A9e-35651531097LOB family transfactor Ramosa2.1
5ly0_B9e-35651531097LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070190.18e-59LOB domain-containing protein 20
RefseqXP_020547496.18e-59LOB domain-containing protein 20
SwissprotQ9SRV31e-56LBD20_ARATH; LOB domain-containing protein 20
TrEMBLA0A4D8ZFX62e-62A0A4D8ZFX6_SALSN; Uncharacterized protein
STRINGGorai.007G346200.14e-57(Gossypium raimondii)
STRINGVIT_08s0056g01650.t012e-57(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669