PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100009200061

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

SRS

Protein Properties

Length: 202aa MW: 22188.9 Da PI: 7.9504

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100009200061	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	186.8	8.2e-58	4	141	4	153
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqs 84 +++C dCGnqakkdC+h+RCRtCCk+rgf C+thvkstWvpaa+rr+r qq+aa ++++ kr re+ ++ Ote100009200061\|100009200061 4 EGINCADCGNQAKKDCEHMRCRTCCKNRGFPCQTHVKSTWVPAARRRHRLQQQAAV--------RDENLKRLREN--PASG 74 5689*******************************************9999887........34455666654..2333 PP DUF702 85 alsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 + + + + + + ++P+ev+s+avfrcvrvss+d++ee laY+tav+igGhvfkGiLydqG++ Ote100009200061\|100009200061 75 SHGEFLVCNL--YSIVMGFEFPSEVNSAAVFRCVRVSSMDEAEETLAYHTAVNIGGHVFKGILYDQGPD 141 3333333333..33344556*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.5E-55	5	141	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	7.3E-26	8	49	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	4.3E-24	93	140	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048467	Biological Process	gynoecium development

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MSGEGINCAD CGNQAKKDCE HMRCRTCCKN RGFPCQTHVK STWVPAARRR HRLQQQAAVR 60 DENLKRLREN PASGSHGEFL VCNLYSIVMG FEFPSEVNSA AVFRCVRVSS MDEAEETLAY 120 HTAVNIGGHV FKGILYDQGP DIGRESSSAY VVSQQNLTAV AAPPSSTATT TNVNASILDP 180 SIYPNQMSSF PSNTQFFLPP RP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022856966.1	7e-72	protein SHI RELATED SEQUENCE 1-like
Swissprot	Q9LQZ5	6e-64	SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBL	A0A4D8Y952	2e-73	A0A4D8Y952_SALSN; Uncharacterized protein
STRING	Migut.N03122.1.p	1e-69	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA678	24	110

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]