PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100009440121

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

YABBY

Protein Properties

Length: 147aa MW: 16629.1 Da PI: 10.4794

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100009440121	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	153.9	1.4e-47	1	121	31	170
YABBY 31 lfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevpr 111 +f++vtvrCGhC++llsvn+a++ q +e++ + ++++++ s++++++ ++l++ p+ Ote100009440121\|100009440121 1 MFTIVTVRCGHCANLLSVNMATFLQDFQVEKQ-----------QSPGGGMEIRE----IGSSTSNRTRFHLDNL---PHPK 63 699**************9999888777765...........22222333332....2333333444454433...4566 PP YABBY 112 vppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +pp irPPekrqrvPsaynrfikeeiqrikasnP+ishreafs+aaknWahfP+ihfgl Ote100009440121\|100009440121 64 MPP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPEISHREAFSTAAKNWAHFPHIHFGL 121 777.9**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.4E-50	1	121	IPR006780	YABBY protein
SuperFamily	SSF47095	2.09E-8	62	115	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	3.6E-5	69	115	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development
GO:0010158	Biological Process	abaxial cell fate specification

Sequence ? help Back to Top
Protein Sequence Length: 147 aa Download sequence Send to blast
MFTIVTVRCG HCANLLSVNM ATFLQDFQVE KQQSPGGGME IREIGSSTSN RTRFHLDNLP 60 HPKMPPIRPP EKRQRVPSAY NRFIKEEIQR IKASNPEISH REAFSTAAKN WAHFPHIHFG 120 LKVESNKQAK LDHPVAGEAM AQKSLGF

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011088989.1	4e-70	putative axial regulator YABBY 2 isoform X1
Refseq	XP_011088990.1	4e-70	putative axial regulator YABBY 2 isoform X1
Swissprot	Q9XFB0	6e-57	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A0X9RCW2	3e-73	A0A0X9RCW2_MENSP; YABBY family protein 2
STRING	XP_004487438.1	6e-62	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA381	24	163

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]