PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100009830031

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

NAC

Protein Properties

Length: 317aa MW: 34799 Da PI: 9.7976

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100009830031	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	126.1	2.8e-39	16	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 lppGfrFhPtdeel+v+yLkkk++ + d + k+ +e+ewyfFs+r++ky++g+r+nra++sg Ote100009830031\|100009830031 16 LPPGFRFHPTDEELLVHYLKKKAAXXXXXXA----GGDHRRG-------KACFGEQEWYFFSPRERKYPNGERPNRAATSG 85 79*******************99996662....2222221.......2223789********************* PP NAM 82 yWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 yWkatg+dk++l++ +++++g+kk Lvfy g+ pkg+kt+W+mheyrl Ote100009830031\|100009830031 86 YWKATGTDKPILTAnGSQKIGVKKALVFYGGKPPKGVKTNWIMHEYRL 133 *******99867888*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.27E-50	12	167	IPR003441	NAC domain
PROSITE profile	PS51005	48.512	16	167	IPR003441	NAC domain
Pfam	PF02365	2.7E-27	17	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MEGTTSSSGG SHQPRLPPGF RFHPTDEELL VHYLKKKAAX XXXXXAGGDH RRGKACFGEQ 60 EWYFFSPRER KYPNGERPNR AATSGYWKAT GTDKPILTAN GSQKIGVKKA LVFYGGKPPK 120 GVKTNWIMHE YRLIGENSSA NKPPGINLPK KSSLRLDDWV LCRIFKKNSS SCSTEDGHFP 180 APVQNRASDY SNMYTGNPMC MAEADESTIF PAKGWEVQAD HSLNPNETSP PIPPTPQNPN 240 ITTQITLQGD SNRAIRTLLA ASISFVAAMI SSAGGLNGGA LFIPILTIVI GLDVKTASTY 300 SAFMVTWKYE GTFAWRI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-57	13	171	14	169	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-57	13	171	14	169	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-57	13	171	14	169	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-57	13	171	14	169	NO APICAL MERISTEM PROTEIN
3swm_A	5e-57	13	171	17	172	NAC domain-containing protein 19
3swm_B	5e-57	13	171	17	172	NAC domain-containing protein 19
3swm_C	5e-57	13	171	17	172	NAC domain-containing protein 19
3swm_D	5e-57	13	171	17	172	NAC domain-containing protein 19
3swp_A	5e-57	13	171	17	172	NAC domain-containing protein 19
3swp_B	5e-57	13	171	17	172	NAC domain-containing protein 19
3swp_C	5e-57	13	171	17	172	NAC domain-containing protein 19
3swp_D	5e-57	13	171	17	172	NAC domain-containing protein 19
4dul_A	5e-57	13	171	14	169	NAC domain-containing protein 19
4dul_B	5e-57	13	171	14	169	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000305\|PubMed:21107887}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011096265.1	4e-91	NAC transcription factor 25
Swissprot	Q8GY42	1e-75	NAC25_ARATH; NAC transcription factor 25
TrEMBL	A0A2G9HQE1	5e-85	A0A2G9HQE1_9LAMI; Uncharacterized protein
STRING	VIT_00s0375g00040.t01	3e-84	(Vitis vinifera)
STRING	XP_009769986.1	4e-84	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1814	24	66