PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100010270081
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family GRAS
Protein Properties Length: 533aa    MW: 59342.6 Da    PI: 7.9611
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100010270081genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS241.43.9e-7419853357374
                          GRAS  57 vselykalppsetsekn....sseelaalklfsevsPilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqa 131
                                    +++++a+ +se++ +     s+++ a++k ++e s +++++ ++aN aIlea++++  +++H++Dfd+ qG+Q++ Ll+a
  Ote100010270081|100010270081 198 LQQVANACGSSEQRLTAhmlfSTQHGASTKSLYEFSLCFRLGIMAANFAILEAAAEDgyNKIHVLDFDVAQGGQYVHLLHA 278
                                   55566666555544444466799999999************************998888********************** PP

                          GRAS 132 LasRp.....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp........g 199
                                   La+++     +++p+l iT++ +  ++  ee +++ge L+ +A+++gv+f+f v    ++++l+ ++L++++         
  Ote100010270081|100010270081 279 LAAQKqlnsnKPSPTLTITAFTD-LATAVEEKKAVGEGLRALANRIGVEFNFYV-RNLNIAELSRDKLEIQSxxxxxxxxX 357
                                   **776688888899*********.44689999*********************9.888***********999655544432 PP

                          GRAS 200 EalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                                                     v++e+ rde+L+ vk+lsP++++vveqe+++n++++l+r+ e+ eyy+al+dsl+a+++re++
  Ote100010270081|100010270081 358 XXXXXXXXXXXXXXXXXXVTTENLRDELLRRVKGLSPNIITVVEQELNTNTAPLLARVRETYEYYAALMDSLDATVARENS 438
                                   33333333334444488999999********************************************************** PP

                          GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslv 359
                                   er+ +E+  lgr+i n vaceg++r+er+e ++kWr+r+++aGF++ p+s+ a+++ +l l+       g+ v+eesg + 
  Ote100010270081|100010270081 439 ERVRIEEG-LGRKIGNSVACEGRDRVERCEVFGKWRARMSMAGFQTRPMSQLAVQSLRLKLNSGTrgCAGFIVNEESGGIS 518
                                   ********.**************************************************99876546789*********** PP

                          GRAS 360 lgWkdrpLvsvSaWr 374
                                   +gWk+++L+++S Wr
  Ote100010270081|100010270081 519 FGWKGKKLTVASTWR 533
                                   **************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098530.066111511IPR005202Transcription factor GRAS
PfamPF035141.3E-71198533IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MSSGFSGGAP DFFTAGRRPT LTPPNINNVN FTAQHQLSVP GILSDTAAQI RRPDIIGKRS  60
LEEFQQQQSF LQHHSNLGFY LRNVKQRPNH HHAYPVSPAD LSPLSAISPD FSSAXXXXXX  120
XXXXXMNSRY GLPILQQRHL QPLNLSNRNV TNNELEKQLL ADEDDGETVS VVTNSEWSET  180
IQNLIGKPEV AAEILTRLQQ VANACGSSEQ RLTAHMLFST QHGASTKSLY EFSLCFRLGI  240
MAANFAILEA AAEDGYNKIH VLDFDVAQGG QYVHLLHALA AQKQLNSNKP SPTLTITAFT  300
DLATAVEEKK AVGEGLRALA NRIGVEFNFY VRNLNIAELS RDKLEIQSXX XXXXXXXXXX  360
XXXXXXXXXX XXXXXVTTEN LRDELLRRVK GLSPNIITVV EQELNTNTAP LLARVRETYE  420
YYAALMDSLD ATVARENSER VRIEEGLGRK IGNSVACEGR DRVERCEVFG KWRARMSMAG  480
FQTRPMSQLA VQSLRLKLNS GTRGCAGFIV NEESGGISFG WKGKKLTVAS TWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-2523153375375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076123.10.0scarecrow-like protein 8
TrEMBLA0A2G9I9L60.0A0A2G9I9L6_9LAMI; Uncharacterized protein
STRINGMigut.F01094.1.p1e-176(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40232443