PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100010730081

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

YABBY

Protein Properties

Length: 193aa MW: 21949.7 Da PI: 8.2125

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100010730081	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	161.7	5.7e-50	2	144	5	158
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksn 85 +++eq+Cy+ CnfCn ilavsvP +s+f vvtvrCGhCt+l svn+a a q l + + ++ +++e+ +++ Ote100010730081\|100010730081 2 EAAEQLCYIPCNFCNIILAVSVPCSSIFDVVTVRCGHCTNLWSVNMAAAFQCLQPPWQ------DFQVPSYGSAEHRVEMG 76 5789***************************************9998887766554......33455556666666555 PP YABBY 86 vekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaak 158 +++ +++ +++ + + p v+rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aa Ote100010730081\|100010730081 77 SSSRWNPRMQIQPP-----SFIHKPDHRLVNRPPEKRQRVPSAYNQFIKEEIQRIKAKNPDISHREAFSTAAX 144 55554444444443.....333444445589**************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	2.3E-57	3	143	IPR006780	YABBY protein
SuperFamily	SSF47095	1.57E-6	93	140	IPR009071	High mobility group box domain
CDD	cd00084	2.83E-4	110	137	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
MEAAEQLCYI PCNFCNIILA VSVPCSSIFD VVTVRCGHCT NLWSVNMAAA FQCLQPPWQD 60 FQVPSYGSAE HRVEMGSSSR WNPRMQIQPP SFIHKPDHRL VNRPPEKRQR VPSAYNQFIK 120 EEIQRIKAKN PDISHREAFS TAAXXXXLGT FSSYPFWTNA GXXATKLKQL TSYFVMSVFV 180 ATSFDCFVDV FLS

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011078402.1	2e-76	axial regulator YABBY 5
Swissprot	Q8GW46	6e-63	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A2G9GBC8	1e-75	A0A2G9GBC8_9LAMI; Uncharacterized protein
STRING	XP_002527201.1	2e-72	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA381	24	163

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]