PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100011220121

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

LBD

Protein Properties

Length: 166aa MW: 18369.5 Da PI: 7.0123

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100011220121	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	137.4	5.1e-43	11	109	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 +CaaCk+lrrkC ++C++apyfp e+p kfanvhk+FGasnv+kll+++ +++reda++sl+yeAear++dPvyG+vg i+ Ote100011220121\|100011220121 11 PCAACKFLRRKCLSGCIFAPYFPPEEPTKFANVHKIFGASNVSKLLNEILPHQREDAVNSLAYEAEARLKDPVYGCVGAIS 91 7****************************************************************************** PP DUF260 82 klqqqleqlkaelallke 99 lq+q+ ql++el+++++ Ote100011220121\|100011220121 92 VLQRQVLQLQKELDATNA 109 ***********99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	27.059	10	111	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.2E-42	11	108	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 166 aa Download sequence Send to blast
MASSSSYSNP PCAACKFLRR KCLSGCIFAP YFPPEEPTKF ANVHKIFGAS NVSKLLNEIL 60 PHQREDAVNS LAYEAEARLK DPVYGCVGAI SVLQRQVLQL QKELDATNAD LMRYTSNDYG 120 VNINHQRNVE RRMGYDSGSG SYDPNPGYSL PYSYGENPDH TGHGSN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-64	2	120	2	120	LOB family transfactor Ramosa2.1
5ly0_B	3e-64	2	120	2	120	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011097516.1	2e-88	LOB domain-containing protein 25-like
Swissprot	Q8L8Q3	3e-68	LBD25_ARATH; LOB domain-containing protein 25
TrEMBL	A0A4D9APX9	4e-87	A0A4D9APX9_SALSN; Uncharacterized protein
STRING	XP_009597524.1	3e-78	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]