PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100012231211
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MIKC_MADS
Protein Properties Length: 167aa    MW: 19295.5 Da    PI: 9.2518
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100012231211genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF79.62.1e-25958150
                                  S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                        SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                                  krien   rqvtf+kRr+g+lKKA+ELSvLCdae+ + ifs +gklye +
  Ote100012231211|100012231211  9 KRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGLFIFSAHGKLYELA 58
                                  79*********************************************965 PP
2K-box33.51.7e-1282149672
                         K-box   6 gksleeakaeslqqelakLkkeienLqreqRhllGedL.esLslkeLqqLeqqLekslkkiRskKnel 72 
                                    k+++ +++ +l++e+  Lk eie+Lq+ +R + G +  +++sl+eL+ Le++Le+ + ++Rs K   
  Ote100012231211|100012231211  82 AKDKQVSNYGELKEEIILLKHEIETLQKGLRYISGGGTpGTMSLNELNVLEKHLETWIYQVRSAKVCS 149
                                   556788999************************98775489**********************99655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.4E-36160IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.93E-28174IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.955161IPR002100Transcription factor, MADS-box
CDDcd002657.26E-39275No hitNo description
PRINTSPR004042.7E-27323IPR002100Transcription factor, MADS-box
PfamPF003191.9E-221056IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-273859IPR002100Transcription factor, MADS-box
PfamPF014863.6E-1186160IPR002487Transcription factor, K-box
PROSITE profilePS512978.63790167IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MARGKIQMKR IENPVHRQVT FCKRRAGLLK KAKELSVLCD AEIGLFIFSA HGKLYELATK  60
GCMQSLIEKY TKYTKEIPAE EAKDKQVSNY GELKEEIILL KHEIETLQKG LRYISGGGTP  120
GTMSLNELNV LEKHLETWIY QVRSAKVCSY TYHMHLHYDK IKYEIEA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A4e-18174173MEF2 CHIMERA
6byy_B4e-18174173MEF2 CHIMERA
6byy_C4e-18174173MEF2 CHIMERA
6byy_D4e-18174173MEF2 CHIMERA
6bz1_A4e-18174173MEF2 CHIMERA
6bz1_B4e-18174173MEF2 CHIMERA
6bz1_C4e-18174173MEF2 CHIMERA
6bz1_D4e-18174173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
UniProtProbable transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020555041.14e-75agamous-like MADS-box protein AGL12 isoform X2
SwissprotA2YQK92e-55MAD26_ORYSI; MADS-box transcription factor 26
SwissprotQ0J8G82e-55MAD26_ORYSJ; MADS-box transcription factor 26
TrEMBLA0A4D8Z1415e-84A0A4D8Z141_SALSN; Uncharacterized protein
STRINGMigut.C01339.1.p3e-74(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA98102024
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Lee S, et al.
    Further characterization of a rice AGL12 group MADS-box gene, OsMADS26.
    Plant Physiol., 2008. 147(1): p. 156-68
    [PMID:18354041]
  3. Khong GN, et al.
    OsMADS26 Negatively Regulates Resistance to Pathogens and Drought Tolerance in Rice.
    Plant Physiol., 2015. 169(4): p. 2935-49
    [PMID:26424158]