PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100013890081

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

LBD

Protein Properties

Length: 176aa MW: 19764.6 Da PI: 7.8287

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100013890081	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	120.1	1.2e-37	5	104	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 +CaaCk+lrr+C++dC+++pyfp+++p++fa+vhk++Gasnv k+l++lp + r +a+++l+yeA +r++dPvyG++g+++ Ote100013890081\|100013890081 5 RCAACKHLRRRCPSDCIFSPYFPSNNPRRFAYVHKIYGASNVGKILQDLPVNCRAQAADTLCYEAYCRIKDPVYGCAGMVS 85 6****************************************************************************** PP DUF260 82 klqqqleqlkaelallkee 100 l+qql+ ++ +la++k+e Ote100013890081\|100013890081 86 VLHQQLNVAECQLARIKAE 104 ***********999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.282	4	105	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.5E-37	5	102	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016020	Cellular Component	membrane

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
MNSSRCAACK HLRRRCPSDC IFSPYFPSNN PRRFAYVHKI YGASNVGKIL QDLPVNCRAQ 60 AADTLCYEAY CRIKDPVYGC AGMVSVLHQQ LNVAECQLAR IKAEIAAIRN ESTSVDPEYQ 120 QQIELPSLSP YYCFPDQSAT AALGSTSMCY ASLPTWFPVQ XXXXXXXXFF FSVNDI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-32	6	111	12	110	LOB family transfactor Ramosa2.1
5ly0_B	4e-32	6	111	12	110	LOB family transfactor Ramosa2.1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011098999.1	1e-68	LOB domain-containing protein 23-like
Swissprot	P59468	7e-45	LBD24_ARATH; LOB domain-containing protein 24
TrEMBL	A0A2G9G458	2e-67	A0A2G9G458_9LAMI; Uncharacterized protein
STRING	Migut.K00626.1.p	9e-59	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5277	20	39