PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100014550041
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family HD-ZIP
Protein Properties Length: 192aa    MW: 21783.9 Da    PI: 10.2274
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100014550041genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.11.7e-1964118256
                                   T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                   rk+ ++t++q++ Le+ F ++ ++++++++ LA+kl+L+ rqV vWFqNrRa+ k
  Ote100014550041|100014550041  64 RKKLKLTRDQTTLLEDSFTQHTTLNTAQKQALAEKLNLKPRQVEVWFQNRRARTK 118
                                   678899***********************************************98 PP
2HD-ZIP_I/II115.43.5e-3764154191
                   HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 
                                   +kk++l+++q +lLE+sF+++++L++ +K++la++L+l+prqv+vWFqnrRARtk+kq+E+++++Lk+++++l+een+rL+
  Ote100014550041|100014550041  64 RKKLKLTRDQTTLLEDSFTQHTTLNTAQKQALAEKLNLKPRQVEVWFQNRRARTKLKQTEVECAMLKKNCERLSEENRRLK 144
                                   69******************************************************************************* PP

                   HD-ZIP_I/II  82 keveeLreel 91 
                                   kev eLr+++
  Ote100014550041|100014550041 145 KEVLELRSSM 154
                                   *******887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.18E-1849121IPR009057Homeodomain-like
PROSITE profilePS5007116.55260120IPR001356Homeobox domain
SMARTSM003893.7E-1462124IPR001356Homeobox domain
CDDcd000861.76E-1364121No hitNo description
Gene3DG3DSA:1.10.10.601.1E-1764123IPR009057Homeodomain-like
PfamPF000461.0E-1664118IPR001356Homeobox domain
PROSITE patternPS00027095118IPR017970Homeobox, conserved site
SMARTSM003406.0E-12120164IPR003106Leucine zipper, homeobox-associated
PfamPF021838.2E-9120153IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MDGNGEVCLG LGLGLPEFSQ KREVPQNKNK RLLFLDLSIP VQQNDHDKQT SFSQDINFSM  60
NFGRKKLKLT RDQTTLLEDS FTQHTTLNTA QKQALAEKLN LKPRQVEVWF QNRRARTKLK  120
QTEVECAMLK KNCERLSEEN RRLKKEVLEL RSSMEIEKPA AFFHHDHKGA AAAGRGGGGK  180
PAAAVLEVVH HP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012837577.12e-63PREDICTED: homeobox-leucine zipper protein HOX17-like
TrEMBLA0A4D9BMB13e-70A0A4D9BMB1_SALSN; Homeobox-leucine zipper protein
STRINGMigut.J01509.1.p2e-52(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1613945