PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100015150061
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family WRKY
Protein Properties Length: 346aa    MW: 38875.9 Da    PI: 10.1425
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100015150061genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.35.8e-32280337359
                                   -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                   D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ edp+++++tYegeHnh+
  Ote100015150061|100015150061 280 DEYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEDPSMLIVTYEGEHNHP 337
                                   9************************9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105333.5E-18231276IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.6E-34266338IPR003657WRKY domain
PROSITE profilePS5081130.503273339IPR003657WRKY domain
SuperFamilySSF1182901.57E-27276338IPR003657WRKY domain
SMARTSM007741.3E-39278338IPR003657WRKY domain
PfamPF031069.7E-28280337IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MEEVEKANIA AVESCHRVIS ILNQPQDQNL CRNLAKQTDE AVQKFKKVVS LLNSSCGHAR  60
VRKSKKIQSP YPQNIFLENP ILQNNDHHHH QPKPLNLLQI NPKDQEIIKN SLTLGSSSLE  120
LSSHNKNLXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXAELMY RRSNSGISLN  180
FDSSSCTPTM SSTRSFISSL SMDGSVANLD GNAFRLIGAA RSADQASFHH KRRCSGRGED  240
GSVKCGGSGR CHCSKKRKHR VKRSIKVPAI SNKIADIPPD EYSWRKYGQK PIKGSPHPRG  300
YYKCSSMRGC PARKHVERCL EDPSMLIVTY EGEHNHPRMP SQSANA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-20271340775WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011080000.11e-178probable WRKY transcription factor 21 isoform X1
RefseqXP_011082616.11e-178probable WRKY transcription factor 21
SwissprotQ9SR071e-101WRK39_ARATH; Probable WRKY transcription factor 39
TrEMBLA0A0D5YA320.0A0A0D5YA32_SALMI; WRKY protein
STRINGXP_009778997.11e-166(Nicotiana sylvestris)
STRINGMigut.N02187.1.p1e-166(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32712350
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]