PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100015360061
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family GATA
Protein Properties Length: 132aa    MW: 14701.2 Da    PI: 10.8143
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100015360061genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.51.9e-182963135
                          GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                                  Cs C+tt TplWR gp g+k+LCnaCG++y kk++
  Ote100015360061|100015360061 29 CSDCHTTRTPLWRGGPAGPKSLCNACGIKYNKKRR 63
                                  ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.5452358IPR000679Zinc finger, GATA-type
SMARTSM004019.8E-122381IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.05E-122763No hitNo description
Gene3DG3DSA:3.30.50.102.8E-152863IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.92E-122879No hitNo description
PfamPF003202.9E-162963IPR000679Zinc finger, GATA-type
PROSITE patternPS0034402954IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MMFASSVSFS QKADFEEKNS GISSPLKTCS DCHTTRTPLW RGGPAGPKSL CNACGIKYNK  60
KRRQLLGLDT GKPNKKKKRT SVVRSNEVRE ILKMRFKSDV VLQRSGKLMS KLREEERAAI  120
LLMALSCGSV YA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011079598.14e-68GATA transcription factor 15
TrEMBLA0A4D8ZJQ92e-74A0A4D8ZJQ9_SALSN; Uncharacterized protein
STRINGMigut.D00108.1.p7e-65(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA85032229