PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100015450101
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family Nin-like
Protein Properties Length: 219aa    MW: 25705.3 Da    PI: 6.9421
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100015450101genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK81.39.9e-2683132352
                        RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                                    ++s e++skyF++pi +AAkeL+++lT+LK++CR++GIkRWPhRk+ sl
  Ote100015450101|100015450101  83 RKLSRETISKYFYMPISEAAKELKMGLTLLKKRCRELGIKRWPHRKLISL 132
                                   6899******************************************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.73468152IPR003035RWP-RK domain
PfamPF020425.9E-2185132IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MFIFLFFVCE ISDYAAWDFH LDQFKETDLY PLSFVDILPN DPPEGFSSSE FGGGKDEKMG  60
SCNSEVEHES AMAEKKLEEK DSRKLSRETI SKYFYMPISE AAKELKMGLT LLKKRCRELG  120
IKRWPHRKLI SLQTLINNVK EMRQEGENVR EALQNLENEK RLLEEVPDIE LERGTKRLRQ  180
VYFKANYKRR MMMNRNGTPL FDSTNKAHQN TQVSGDFKE
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027916083.11e-49protein RKD1-like
SwissprotQ9M9U94e-43RKD1_ARATH; Protein RKD1
TrEMBLA0A4D6KWW03e-48A0A4D6KWW0_VIGUN; Uncharacterized protein
STRINGXP_007155308.11e-47(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42742142