PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100016580011
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C2H2
Protein Properties Length: 60aa    MW: 6588.55 Da    PI: 8.5171
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100016580011genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.93.6e-053154123
                                  EEETTTTEEESSHHHHHHHHHH.T CS
                       zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
                                  + C+ C+ksFs+   L  H+++ H
  Ote100016580011|100016580011 31 HCCKECNKSFSSGKALGGHMSSaH 54
                                  57******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.91E-52951No hitNo description
PROSITE profilePS501579.6193159IPR007087Zinc finger, C2H2
PfamPF139122.5E-113154IPR007087Zinc finger, C2H2
PROSITE patternPS0002803254IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 60 aa     Download sequence    Send to blast
MGQDEEGGSR IPMVKIKIRK KVEDEEIIKS HCCKECNKSF SSGKALGGHM SSAHVQANKD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011090475.22e-14uncharacterized protein LOC105171147
TrEMBLA0A4D8XWK61e-18A0A4D8XWK6_SALSN; Uncharacterized protein
TrEMBLA0A4D9ALF11e-18A0A4D9ALF1_SALSN; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20502263