PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100017900131

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

NAC

Protein Properties

Length: 242aa MW: 27794.1 Da PI: 7.0469

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100017900131	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	130.7	1.1e-40	6	135	1	127
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyat.gkrknrat 78 +p+GfrF Pt+eelv++yL++k+++++ e+++vi+ ++iy+++P+dLp+ e ++w+fFs r+++++t g r+nr t Ote100017900131\|100017900131 6 VPKGFRFYPTEEELVSFYLHNKLHRTRPEIDRVIPLLHIYDYNPSDLPRgeYSPVEGEQWFFFSGREERETTrGGRPNRLT 86 589*************************999***********5334444888**99988876599** PP NAM 79 ksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 k gyWkatg+ +v+s+ ++++g k+t+vfy+grap+g+kt W m ey+ Ote100017900131\|100017900131 87 KWGYWKATGSPGDVYSSLNRVIGRKRTMVFYEGRAPHGTKTAWKMIEYK 135 *************99***************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.53E-42	4	155	IPR003441	NAC domain
PROSITE profile	PS51005	44.587	6	156	IPR003441	NAC domain
Pfam	PF02365	2.1E-20	7	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
MEEEQVPKGF RFYPTEEELV SFYLHNKLHR TRPEIDRVIP LLHIYDYNPS DLPRGEYSPV 60 EGEQWFFFSG REERETTRGG RPNRLTKWGY WKATGSPGDV YSSLNRVIGR KRTMVFYEGR 120 APHGTKTAWK MIEYKAFSGS PPELREEVCL CRIYKLSKSL RAFDRRPPPV AVGGDEAGTQ 180 QNEATAFNIS AVVPEITDSS SSGDSSAAAD LHRFVKSWSD RRPENPSDGG EIFWDCARLN 240 WF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-24	1	159	12	168	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-24	1	159	12	168	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-24	1	159	12	168	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-24	1	159	12	168	NO APICAL MERISTEM PROTEIN
3swm_A	1e-24	1	159	15	171	NAC domain-containing protein 19
3swm_B	1e-24	1	159	15	171	NAC domain-containing protein 19
3swm_C	1e-24	1	159	15	171	NAC domain-containing protein 19
3swm_D	1e-24	1	159	15	171	NAC domain-containing protein 19
3swp_A	1e-24	1	159	15	171	NAC domain-containing protein 19
3swp_B	1e-24	1	159	15	171	NAC domain-containing protein 19
3swp_C	1e-24	1	159	15	171	NAC domain-containing protein 19
3swp_D	1e-24	1	159	15	171	NAC domain-containing protein 19
4dul_A	1e-24	1	159	12	168	NAC domain-containing protein 19
4dul_B	1e-24	1	159	12	168	NAC domain-containing protein 19
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020553649.1	7e-80	NAC domain-containing protein 90-like isoform X2
TrEMBL	A0A2G9GF60	2e-83	A0A2G9GF60_9LAMI; Uncharacterized protein
STRING	GLYMA19G38211.1	2e-71	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2494	23	57