PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100019310001
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family HD-ZIP
Protein Properties Length: 194aa    MW: 22066.9 Da    PI: 7.2576
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100019310001genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.94.6e-202779456
                                  -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                                  + ++++eqle Le+ F+++ +++ +++ +LAk lgL+ rq+ vWFqNrRa++k
  Ote100019310001|100019310001 27 KKRLSTEQLESLENSFQEEIKLDPDRKMKLAKDLGLQPRQIAVWFQNRRARWK 79
                                  55699***********************************************9 PP
2HD-ZIP_I/II123.11.4e-3926116292
                   HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLek 82 
                                   kk+rls+eq+++LE+sF+ee kL+p+rK++la++Lglqprq+avWFqnrRAR+k kqlE+ y+aLk++yda+++++++L++
  Ote100019310001|100019310001  26 KKKRLSTEQLESLENSFQEEIKLDPDRKMKLAKDLGLQPRQIAVWFQNRRARWKGKQLERLYDALKQEYDAVSRDKHKLQQ 106
                                   9******************************************************************************** PP

                   HD-ZIP_I/II  83 eveeLreelk 92 
                                   ev +Lr+ lk
  Ote100019310001|100019310001 107 EVLALRAILK 116
                                   ******8876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.99E-191882IPR009057Homeodomain-like
PROSITE profilePS5007117.0222181IPR001356Homeobox domain
SMARTSM003898.3E-182485IPR001356Homeobox domain
CDDcd000863.20E-162682No hitNo description
PfamPF000463.3E-172779IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.9E-212888IPR009057Homeodomain-like
PRINTSPR000319.7E-65261IPR000047Helix-turn-helix motif
PROSITE patternPS0002705679IPR017970Homeobox, conserved site
PRINTSPR000319.7E-66177IPR000047Helix-turn-helix motif
PfamPF021831.5E-781115IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010434Biological Processbract formation
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MKQGASGIME KXXXXXXXXY GGQDPKKKRL STEQLESLEN SFQEEIKLDP DRKMKLAKDL  60
GLQPRQIAVW FQNRRARWKG KQLERLYDAL KQEYDAVSRD KHKLQQEVLA LRAILKDQVT  120
KKQVSAGDTD VSGEXXXXGE ETVESTSIPS SEKGRGESNN NVNQVGECTY VLNVEDYSPM  180
MMTPYNWGAL PSCP
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00486DAPTransfer from AT5G03790Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012831797.18e-92PREDICTED: homeobox-leucine zipper protein ATHB-22
SwissprotQ9LZR03e-51ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBLA0A4D9C6202e-98A0A4D9C620_SALSN; Homeobox-leucine zipper protein
STRINGMigut.J00491.1.p3e-91(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38692246
Publications ? help Back to Top
  1. Andres RJ, et al.
    Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.).
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66
    [PMID:27999177]
  2. Vuolo F, et al.
    LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication.
    Genes Dev., 2018. 32(21-22): p. 1361-1366
    [PMID:30366902]