PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100019640031

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

SBP

Protein Properties

Length: 1058aa MW: 117042 Da PI: 7.478

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100019640031	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	127.8	4.3e-40	139	216	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C+ dls+ak+yhrrhkvCevhska+++lv ++++rfCqqCsrfh lsefD++krsCrrrLa+hn+rrrk+q+ Ote100019640031\|100019640031 139 MCQVDDCKDDLSTAKDYHRRHKVCEVHSKASNALVGKQMRRFCQQCSRFHPLSEFDDGKRSCRRRLAGHNRRRRKSQP 216 6**************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	3.3E-33	134	201	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.419	137	214	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.7E-36	138	217	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	3.2E-29	140	213	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	9.41E-7	801	949	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	1.1E-4	811	948	IPR020683	Ankyrin repeat-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0042742	Biological Process	defense response to bacterium
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005886	Cellular Component	plasma membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1058 aa Download sequence Send to blast
MEDVGAQVAS PVVIHQTLPQ RFHNTHQIAK KRSVPFYSSS FVYQNPSDNW DPKSWDWDGS 60 RFIARPLQCK EAHNRASNPA EDQTRKDDGN LQLKLGGGEK QDASNGIRGH MDLTEESNPV 120 SRPSKRVRSG SPGNANRPMC QVDDCKDDLS TAKDYHRRHK VCEVHSKASN ALVGKQMRRF 180 CQQCSRFHPL SEFDDGKRSC RRRLAGHNRR RRKSQPEDAT PQVSLPSGVH NDINCDMDVI 240 NLLAALARPR DGNREDKNAK SSSLPHKDQL VQILSRINSL PLPAILAAKL PHLKTTSGSA 300 SDHGHSENQD QMSANASSQS TMDLLAGLKG TLGLHSDARE IQWQASSERS ESEKSKSPSV 360 EDAARLDLQK GSVGGEGSST SCQHSPMEEV ECHAPETSPS LHLQLFSSSP EDISTRKLPL 420 NANYLSSNSS NISREISPTS SPPLVHDLFP MRSSREEVKD NHTSNSEDEL ACVKSTTSNG 480 CSTSLRLFGG SVQPVEHGSI QISQCQTGYT SSSGSDHSPS SLNSDYQDRT GRIIFKLFDK 540 DPSHLPDSLR SQIFNWLSNS PSEMESYIRP GCIFMSIYLS MPLYAWDRLE ENLFDRVRSL 600 GEGIDANFWG NGRFLVCTER QMASHRDGKI HLCKSWSGLT IPELLSVSPV AVVAGQETSL 660 LLRGRSLTAP GTKIHCTHAD GYDIKVVRAS ASGDPVLDEI NLSSFKIRGT ASDVPGRCFI 720 EVENSIRGTT FPVIIADKAI CNELRLLEPQ INDIAEVSSD IPIDHLQSTG RPWSRKVIVQ 780 FLDELGWLFQ RKRNSMLFAA PNYRLNRLKF LLIFAIEHDF CALVKTLLDI LLELNLGQKG 840 LEAESMGMLW EIHPLNRAVR RRCQRMVDLL VHYSIIGLND GSEKHIFPPN LAGPGGLTPL 900 HLAACASSLD DMVSALISDP QEVGLHSWNS ALDANGFSPY AYATMRQNHS YNALVARKLG 960 ERKNGEVCVS IENENNTLEV DDEKKKKTTT KSCSMCAVAA YKHGKSFPSS QGLLQRPYIH 1020 SMLLVAAVCV CVCVFLRGRP YVGCVAPFVW ENLNYGAS

Sequence ? help Back to Top

Protein Sequence Length: 1058 aa Download sequence Send to blast

MEDVGAQVAS PVVIHQTLPQ RFHNTHQIAK KRSVPFYSSS FVYQNPSDNW DPKSWDWDGS  60
RFIARPLQCK EAHNRASNPA EDQTRKDDGN LQLKLGGGEK QDASNGIRGH MDLTEESNPV  120
SRPSKRVRSG SPGNANRPMC QVDDCKDDLS TAKDYHRRHK VCEVHSKASN ALVGKQMRRF  180
CQQCSRFHPL SEFDDGKRSC RRRLAGHNRR RRKSQPEDAT PQVSLPSGVH NDINCDMDVI  240
NLLAALARPR DGNREDKNAK SSSLPHKDQL VQILSRINSL PLPAILAAKL PHLKTTSGSA  300
SDHGHSENQD QMSANASSQS TMDLLAGLKG TLGLHSDARE IQWQASSERS ESEKSKSPSV  360
EDAARLDLQK GSVGGEGSST SCQHSPMEEV ECHAPETSPS LHLQLFSSSP EDISTRKLPL  420
NANYLSSNSS NISREISPTS SPPLVHDLFP MRSSREEVKD NHTSNSEDEL ACVKSTTSNG  480
CSTSLRLFGG SVQPVEHGSI QISQCQTGYT SSSGSDHSPS SLNSDYQDRT GRIIFKLFDK  540
DPSHLPDSLR SQIFNWLSNS PSEMESYIRP GCIFMSIYLS MPLYAWDRLE ENLFDRVRSL  600
GEGIDANFWG NGRFLVCTER QMASHRDGKI HLCKSWSGLT IPELLSVSPV AVVAGQETSL  660
LLRGRSLTAP GTKIHCTHAD GYDIKVVRAS ASGDPVLDEI NLSSFKIRGT ASDVPGRCFI  720
EVENSIRGTT FPVIIADKAI CNELRLLEPQ INDIAEVSSD IPIDHLQSTG RPWSRKVIVQ  780
FLDELGWLFQ RKRNSMLFAA PNYRLNRLKF LLIFAIEHDF CALVKTLLDI LLELNLGQKG  840
LEAESMGMLW EIHPLNRAVR RRCQRMVDLL VHYSIIGLND GSEKHIFPPN LAGPGGLTPL  900
HLAACASSLD DMVSALISDP QEVGLHSWNS ALDANGFSPY AYATMRQNHS YNALVARKLG  960
ERKNGEVCVS IENENNTLEV DDEKKKKTTT KSCSMCAVAA YKHGKSFPSS QGLLQRPYIH  1020
SMLLVAAVCV CVCVFLRGRP YVGCVAPFVW ENLNYGAS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-30	130	213	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00155	DAP	Transfer from AT1G20980	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011083361.1	0.0	squamosa promoter-binding-like protein 14
TrEMBL	A0A075FFL7	0.0	A0A075FFL7_SALMI; SQUAMOSA promoter binding protein-like 1 (Fragment)
STRING	VIT_18s0122g00380.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12887	12	19