PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100019690111

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

MYB

Protein Properties

Length: 243aa MW: 27731 Da PI: 5.9762

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100019690111	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.3	2.3e-15	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde+l +v ++G +W++ ++ g+ R++k+c++rw +yl Ote100019690111\|100019690111 14 KGAWSKEEDEKLRAYVDRFGQANWRLLPSLAGLARCGKSCRLRWVNYL 61 79********************************************97 PP
2	Myb_DNA-binding	60.1	4.6e-19	67	109	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg++T+ E++l++++++qlG++ W+tIa +m+ gRt++++k++w+ Ote100019690111\|100019690111 67 RGKFTKHEEDLIIKLHHQLGNK-WSTIATKMP-GRTDNEIKNYWH 109 89******************.*****.*********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.717	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	9.36E-30	11	108	IPR009057	Homeodomain-like
SMART	SM00717	1.7E-11	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	4.7E-14	14	61	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.7E-22	15	68	IPR009057	Homeodomain-like
CDD	cd00167	9.91E-9	16	61	No hit	No description
PROSITE profile	PS51294	23.514	62	116	IPR017930	Myb domain
SMART	SM00717	7.1E-16	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	4.0E-16	67	109	IPR001005	SANT/Myb domain
CDD	cd00167	3.48E-11	69	109	No hit	No description
Gene3D	G3DSA:1.10.10.60	5.6E-25	69	114	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MVKPPAFDSN GMKKGAWSKE EDEKLRAYVD RFGQANWRLL PSLAGLARCG KSCRLRWVNY 60 LKPGLKRGKF TKHEEDLIIK LHHQLGNKWS TIATKMPGRT DNEIKNYWHS RVKKVGRRGS 120 NATNLKEEDQ ESSSSGLINS FVTIDHQDKN PKNTDPLDSI ADLYSFAQAE DDRLTCFGQL 180 NVDLSPLFPE EELHDFEFFG DLQNDSSNSL DDGSNVCSSS TVEFRRNLWF ESLADDVLDV 240 VLW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	2e-24	14	114	7	106	B-MYB
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate. {ECO:0000269\|PubMed:11080161}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by exposure to UV-B light. {ECO:0000269\|PubMed:11080161}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012852362.1	6e-78	PREDICTED: transcription factor MYB34-like
Swissprot	Q9SZP1	6e-49	MYB4_ARATH; Transcription repressor MYB4
TrEMBL	W8SLK8	4e-89	W8SLK8_SALMI; Transcription factor mybp
STRING	Migut.M00366.1.p	2e-77	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Schenke D,Cai D,Scheel D Suppression of UV-B stress responses by flg22 is regulated at the chromatin level via histone modification. Plant Cell Environ., 2014. 37(7): p. 1716-21 [PMID:24450952] Zhou M, et al. Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis. Plant J., 2015. 84(2): p. 395-403 [PMID:26332741] Zhang J, et al. Soybean SPX1 is an important component of the response to phosphate deficiency for phosphorus homeostasis. Plant Sci., 2016. 248: p. 82-91 [PMID:27181950] Zhou M, et al. LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis. Plant Physiol., 2017. 174(3): p. 1348-1358 [PMID:28483877] Mondal SK,Roy S Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis. J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601 [PMID:28490275] Verma N,Burma PK Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum. Plant J., 2017. 92(3): p. 481-494 [PMID:28849604]