PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100019740001

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

HD-ZIP

Protein Properties

Length: 241aa MW: 27696.6 Da PI: 6.16

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100019740001	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.2	1.4e-18	20	73	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ +q+++Le+ Fe ++++ e++ +LA++lgL+ rqV vWFqNrRa++k Ote100019740001\|100019740001 20 KKRRLSIDQVKALEKNFEVENKLEPERKLKLAEELGLQPRQVAVWFQNRRARWK 73 4557999**********************************************9 PP
2	HD-ZIP_I/II	128.4	2.9e-41	19	111	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 ekkrrls +qvk+LE++Fe e+kLeperK +la+eLglqprqvavWFqnrRAR+ktkqlE+dy aLk++yd lk + ++L+ Ote100019740001\|100019740001 19 EKKRRLSIDQVKALEKNFEVENKLEPERKLKLAEELGLQPRQVAVWFQNRRARWKTKQLERDYGALKANYDGLKLNFDQLQ 99 69***************************************************************************** PP HD-ZIP_I/II 82 keveeLreelke 93 +++e+L +e++e Ote100019740001\|100019740001 100 HDKESLLKEIHE 111 ****999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	8.13E-19	14	77	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.103	15	75	IPR001356	Homeobox domain
SMART	SM00389	1.8E-16	18	79	IPR001356	Homeobox domain
Pfam	PF00046	7.0E-16	20	73	IPR001356	Homeobox domain
CDD	cd00086	1.65E-15	20	76	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.1E-19	22	82	IPR009057	Homeodomain-like
PRINTS	PR00031	9.5E-6	46	55	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	50	73	IPR017970	Homeobox, conserved site
PRINTS	PR00031	9.5E-6	55	71	IPR000047	Helix-turn-helix motif
Pfam	PF02183	7.8E-17	75	116	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MYSMLEEDCC MEESGHVLEK KRRLSIDQVK ALEKNFEVEN KLEPERKLKL AEELGLQPRQ 60 VAVWFQNRRA RWKTKQLERD YGALKANYDG LKLNFDQLQH DKESLLKEIH ELKSKLDEKG 120 DAITGEAEIX XXXXXXXXXX XXGDLRDGSS DSDSSAVLND DNNNNKSSSR SSMNMSFEYQ 180 PQFVKIEEHN XXXXXXXXXX RAALSSPTIK LPRCTGTATT NGIESIWFKF GACKKQIMIS 240 I

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that acts as a positive regulator of ABA-responsiveness, mediating the inhibitory effect of ABA on growth during seedling establishment. Binds to the DNA sequence 5'-CAATNATTG-3'. {ECO:0000269\|PubMed:12678559}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by abscisic acid (ABA) and by salt stress. {ECO:0000269\|PubMed:12678559, ECO:0000269\|PubMed:16055682}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012840820.1	5e-74	PREDICTED: homeobox-leucine zipper protein ATHB-6-like
Swissprot	P46667	1e-50	ATHB5_ARATH; Homeobox-leucine zipper protein ATHB-5
TrEMBL	A0A022R4P8	1e-72	A0A022R4P8_ERYGU; Uncharacterized protein
STRING	Migut.L00161.1.p	2e-73	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2718	24	53

Publications ? help Back to Top
Cassan-Wang H, et al. Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis. Front Plant Sci, 2013. 4: p. 189 [PMID:23781226] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239] Stamm P, et al. The Transcription Factor ATHB5 Affects GA-Mediated Plasticity in Hypocotyl Cell Growth during Seed Germination. Plant Physiol., 2017. 173(1): p. 907-917 [PMID:27872245]