PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100020040021
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB
Protein Properties Length: 410aa    MW: 46129.6 Da    PI: 8.1876
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100020040021genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.56.3e-082869343
                                  SS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHH CS
               Myb_DNA-binding  3 rWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksr 43
                                   WT+eEd+ + +a + +  +   W++Ia+ ++ g+t  ++k +
  Ote100020040021|100020040021 28 EWTKEEDKAFENALANYYYDadIWDKIASAVP-GKTIQDIKIH 69
                                  6****************99999**********.******9966 PP
2Myb_DNA-binding391.9e-12113157347
                                   SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   +WT+eE+ +++ + +++G+g+Wk I+r+   +++  q+ s+ qky
  Ote100020040021|100020040021 113 PWTEEEHRQFLYGLQRFGKGDWKNISRYSVRTKSNSQVSSHAQKY 157
                                   8*****************************9*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.00332576IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-52774IPR009057Homeodomain-like
PROSITE profilePS500906.2842774IPR017877Myb-like domain
SuperFamilySSF466893.93E-92880IPR009057Homeodomain-like
CDDcd001675.25E-72869No hitNo description
PfamPF002492.0E-52867IPR001005SANT/Myb domain
PROSITE profilePS5129413.901106162IPR017930Myb domain
SMARTSM007176.6E-10110160IPR001005SANT/Myb domain
SuperFamilySSF466899.66E-15110162IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.8E-9112159IPR009057Homeodomain-like
TIGRFAMsTIGR015572.1E-14112160IPR006447Myb domain, plants
CDDcd001677.50E-9113158No hitNo description
PfamPF002497.6E-9113157IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MDADYTFNRC SGPMEDDAAS KNACTVSEWT KEEDKAFENA LANYYYDADI WDKIASAVPG  60
KTIQDIKIHH DALITDVKAI ESGQVPLPNY RSEVRVREER QSSRNGEQAR GTPWTEEEHR  120
QFLYGLQRFG KGDWKNISRY SVRTKSNSQV SSHAQKYFKR LSSAKEGKRV SINDIRTVNP  180
KKLLALEKAA TSCMPERYKE KSANAGTEEL LPESPIRASA DARKKIMPIW PKKASTVGGN  240
RYRKTEKAST SLRKQGLLEF SDKDRSDSGN QLYLSGYTKR ERRKTAYRFS GNEHKEATTD  300
LGNHLVAAYS PPSFDQLLPP PPPFSALSLQ IPFSGRGMGG SSFSTPILAA CDIPSHPFAI  360
EPIQCHQRSM QEPGFYPTGE LMEDVAGEYD FGSTTEIIDQ DMRVFPHFLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-1429921175RADIALIS
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1515946