PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100020890021
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family Trihelix
Protein Properties Length: 103aa    MW: 11599 Da    PI: 10.087
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100020890021genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix79.64.5e-259732085
                      trihelix 20 rlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85
                                  + + +++k+plWe++s+ m+e g++r++k+Ckekwen+nk+++k+k+++kkr s +s+tcpyf+ql
  Ote100020890021|100020890021  9 SKEGSNAKGPLWERISQGMMEMGYNRNAKRCKEKWENINKYFRKTKDSSKKR-SVNSRTCPYFHQL 73
                                  33446899*******************************************8.78888*******9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122037.54E-18754No hitNo description
PfamPF138376.2E-17873No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 103 aa     Download sequence    Send to blast
MSGNGQENSK EGSNAKGPLW ERISQGMMEM GYNRNAKRCK EKWENINKYF RKTKDSSKKR  60
SVNSRTCPYF HQLSCLYSEG TIVAPNHNHT AYMAPAAAHG PAS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078730.11e-40trihelix transcription factor GTL2
SwissprotQ8H1812e-29GTL2_ARATH; Trihelix transcription factor GTL2
TrEMBLA0A4D8XPB56e-41A0A4D8XPB5_SALSN; Uncharacterized protein
STRINGXP_007147154.15e-39(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA137001013
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]