PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100021950081
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MIKC_MADS
Protein Properties Length: 190aa    MW: 21692 Da    PI: 8.4517
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100021950081genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.27.1e-31959151
                                  S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                        SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                  krien++nrqvtf+kRrng+lKKA+ELSvLCdae a+i+fs++g+lyeys+
  Ote100021950081|100021950081  9 KRIENNTNRQVTFCKRRNGLLKKAYELSVLCDAELALIVFSPRGRLYEYSN 59
                                  79***********************************************95 PP
2K-box70.74.5e-245812533100
                         K-box  33 reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                                   +++ hl G++L+sLs+ke++qLe++Le+++ +iR+kK+e++l+++e+lqk+e +l++en +Lr+k++e
  Ote100021950081|100021950081  58 SNINHLTGDGLSSLSVKEMKQLESRLERAIARIRAKKHEMILAETENLQKRESQLEQENACLRAKIAE 125
                                   5789*************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.6E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.277161IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.8E-29261IPR002100Transcription factor, MADS-box
CDDcd002659.25E-38259No hitNo description
PRINTSPR004043.0E-32323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003199.2E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-322338IPR002100Transcription factor, MADS-box
PROSITE profilePS5129710.96233129IPR002487Transcription factor, K-box
PRINTSPR004043.0E-323859IPR002100Transcription factor, MADS-box
PfamPF014862.8E-1859123IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MGRGKIEIKR IENNTNRQVT FCKRRNGLLK KAYELSVLCD AELALIVFSP RGRLYEYSNI  60
NHLTGDGLSS LSVKEMKQLE SRLERAIARI RAKKHEMILA ETENLQKRES QLEQENACLR  120
AKIAENEKLQ QLSMMPGGQD YGIDAYLSGX XXXXXXXXXX XXXXQNENVY PIPQSELLEI  180
SSTKFSDSSV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P7e-20161161Myocyte-specific enhancer factor 2B
1tqe_Q7e-20161161Myocyte-specific enhancer factor 2B
1tqe_R7e-20161161Myocyte-specific enhancer factor 2B
1tqe_S7e-20161161Myocyte-specific enhancer factor 2B
6c9l_A7e-20161161Myocyte-specific enhancer factor 2B
6c9l_B7e-20161161Myocyte-specific enhancer factor 2B
6c9l_C7e-20161161Myocyte-specific enhancer factor 2B
6c9l_D7e-20161161Myocyte-specific enhancer factor 2B
6c9l_E7e-20161161Myocyte-specific enhancer factor 2B
6c9l_F7e-20161161Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in seed development. {ECO:0000269|PubMed:29853599}.
UniProtProbable transcription factor involved in seed development (PubMed:21447172, Ref.1, PubMed:29853599). Plays a role in seed morphogenesis by promoting the correct development of endotesta cell layer, which directs the further development of the seed coat, the endosperm, and consequently the embryo (Ref.1, PubMed:29853599). {ECO:0000269|PubMed:21447172, ECO:0000269|PubMed:29853599, ECO:0000269|Ref.1}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011095997.16e-79agamous-like MADS-box protein AGL11
RefseqXP_011096010.16e-79agamous-like MADS-box protein AGL11
RefseqXP_011096018.16e-79agamous-like MADS-box protein AGL11
RefseqXP_011096026.16e-79agamous-like MADS-box protein AGL11
SwissprotA0A217EJJ03e-61AG11S_VITVI; Agamous-like MADS-box protein AGL11
SwissprotF6I4573e-61AG11C_VITVI; Agamous-like MADS-box protein AGL11
TrEMBLA0A4D8ZV732e-84A0A4D8ZV73_SALSN; MADS-box transcription factor, plant
STRINGMigut.C01334.1.p6e-77(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Mejía N, et al.
    Molecular, genetic and transcriptional evidence for a role of VvAGL11 in stenospermocarpic seedlessness in grapevine.
    BMC Plant Biol., 2011. 11: p. 57
    [PMID:21447172]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]
  5. Malabarba J, et al.
    The MADS-box gene Agamous-like 11 is essential for seed morphogenesis in grapevine.
    J. Exp. Bot., 2017. 68(7): p. 1493-1506
    [PMID:28369525]
  6. Royo C, et al.
    The Major Origin of Seedless Grapes Is Associated with a Missense Mutation in the MADS-Box Gene VviAGL11.
    Plant Physiol., 2018. 177(3): p. 1234-1253
    [PMID:29853599]