PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100021970101
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB_related
Protein Properties Length: 91aa    MW: 10560.7 Da    PI: 9.0908
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100021970101genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.32.3e-101661346
                                  SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                                  +WT    +++ +a +++ ++   +W+ Iar +g g+++++++ ++  
  Ote100021970101|100021970101 16 SWTSKQNKQFEEALARYDKDtpdRWHNIARAVG-GKSAEEVRRHYEV 61
                                  7********************************.**********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.641267IPR017884SANT domain
SMARTSM007172.5E-81365IPR001005SANT/Myb domain
PfamPF002497.1E-81660IPR001005SANT/Myb domain
CDDcd001671.90E-71663No hitNo description
SuperFamilySSF466892.47E-131670IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.2E-71669IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    Send to blast
MASSSMTSAR TCFVSSWTSK QNKQFEEALA RYDKDTPDRW HNIARAVGGK SAEEVRRHYE  60
VLVKDIMQIE TDQVPIPNYR AHNRGYANEQ R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A8e-2817801174RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083673.11e-52protein RADIALIS-like 3
SwissprotQ1A1734e-33RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A4D9BCU01e-44A0A4D9BCU0_SALSN; Uncharacterized protein
STRINGMigut.C00747.1.p4e-41(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231